View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_10 (Length: 354)
Name: NF18764_low_10
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 45024537 - 45024204
Alignment:
| Q |
1 |
cataatagaaattgtttgtagaatgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcactaactct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024537 |
cataatagaaattgtttgtagaatgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcactaactct |
45024438 |
T |
|
| Q |
101 |
tgtctctcacttctcatctttgatattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatatttaacggta |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024437 |
tgtctctcacttctcatcattgatattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatatttaacggta |
45024338 |
T |
|
| Q |
201 |
taagtcatnnnnnnnnnnnnnnnnnnnnnngtacaaagaaagcagtgaccacaatgaatactgcattcgtcacaaccgaacctccgcaaannnnnnngtc |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
45024337 |
taagtcat------agaaagaagaagaagagtacaaagaaagcagtgaccacaatgaataatgcattcgtcacaaccgaacctccgcaaatttttttgtc |
45024244 |
T |
|
| Q |
301 |
aattgtatgtatgtgttgtacaaatgcatgatatcttctt |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45024243 |
aattgtatgtatgtgttgtacaaatgcatgatatcttctt |
45024204 |
T |
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