View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18764_low_11 (Length: 349)
Name: NF18764_low_11
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_11 |
 | |
|
| [»] chr1 (12 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 12159496 - 12159844
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12159496 |
agcgtgattcaatagaaacgaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
12159595 |
T |
|
| Q |
101 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaacaggaaaaacttgaaggaatagatgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12159596 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaacaggaaaaacctgaaggaatagatgta |
12159695 |
T |
|
| Q |
201 |
gcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcaccacccatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
12159696 |
gcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctctacaaatcaccacccctat |
12159795 |
T |
|
| Q |
301 |
ggaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaacc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12159796 |
agaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaacc |
12159844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 12153583 - 12153932
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| |||||| |||||| |||| ||||||| ||||||||||| |||||||||| | | || | |
|
|
| T |
12153583 |
agcgtgattcaatagaaaggaataaaggtataaatgtattgtgattctgtgatgagaagtgggaaaagattaaaagtggctctacaaaccatagctccca |
12153682 |
T |
|
| Q |
101 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaaca-ggaaaaacttg----aaggaatag |
195 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||||| |||| ||| ||| ||| ||||||| || | |||||||| | ||||| ||| |
|
|
| T |
12153683 |
tagaaaaggttgaatttggagcacatgaaatgaataaaattagataaagcacataaaggta--gtgattagaatagggaaaaacccgcagaaaggactag |
12153780 |
T |
|
| Q |
196 |
atgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcaccacc |
295 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||||| | |||| ||||||| || || ||||||||||||| | ||| |||| ||||||| |
|
|
| T |
12153781 |
atgtaatgtgattcaatagaaaggaataaaggtataaatgtaccatgattccttgatgagaaatgtgaaaagattaaaagcgcctcgacaaaccaccacc |
12153880 |
T |
|
| Q |
296 |
catatggaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaa |
347 |
Q |
| |
|
| || ||||| |||||| || ||||| | ||||||||||||||||||||| |
|
|
| T |
12153881 |
cccatagaaaaggttgaacgtagggcacatgaaatgaataaaattagagaaa |
12153932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 12159695 - 12160042
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
100 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||| ||||| | |||| ||||||| |||| ||||||| |||||| |||| ||||||| ||| |||| | |
|
|
| T |
12159695 |
agcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctctacaaatcaccaccccta |
12159794 |
T |
|
| Q |
101 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaacagg-aaaaacttg----aaggaatag |
195 |
Q |
| |
|
||||||| ||||||||||||||| | |||| |||||||||||| ||| ||| ||| |||| ||| ||| |||| | |||||| || ||||||||| |
|
|
| T |
12159795 |
tagaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaaccacataaaggtagcgtggttagaacatgcaaaaacctgcataaaggaatag |
12159894 |
T |
|
| Q |
196 |
atgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcaccacc |
295 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||||||||| |||| ||||||| |||| | | |||||||||| | ||| | |||| || ||| |
|
|
| T |
12159895 |
atgtagcgtgattaaatagaaaggaataaaggtataaatgtaccgtgattccttgatgagaagttgtacaagattaaaagttgctttacaaacaacaacc |
12159994 |
T |
|
| Q |
296 |
catatggaaaatgttgaaagtggggcaaacaaaatgaataaaattaga |
343 |
Q |
| |
|
| | | |||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
12159995 |
cttgtaaaaaaggttgaaagtggggcacatgaaatgaataaaattaga |
12160042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 12153378 - 12153670
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaa--gtaggaaaagtttaaaagtggcactacaaaccacatcccc |
98 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| ||| ||||| | |||||| || || ||||||| ||||| ||| | ||| |||||||| | || |
|
|
| T |
12153378 |
agcgtgattctatagaaatgaataaatgtataaatgtattgtgatttcgtgatgagaaatgtgggaaaagattaaa-gtgtctctaaaaaccacaccgcc |
12153476 |
T |
|
| Q |
99 |
aatagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaacagg-aaaaacttg----aaggaat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||| | |||| ||| ||| |||| ||||||| |||||| |||||| || ||||||| |
|
|
| T |
12153477 |
catagaaaaggttgaaagtggggcacatgaaatgaagaaaattatagaaagcacataaaggtagcgtgattagaacagggaaaaacctgcagaaaggaat |
12153576 |
T |
|
| Q |
194 |
agatgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaa |
287 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| || |||| |||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
12153577 |
agatgtagcgtgattcaatagaaaggaataaaggtataaatgtattgtgattctgtgatgagaagtgggaaaagattaaaagtggctctacaaa |
12153670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 12159899 - 12160254
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||| | | ||| |||||||| || ||||||| ||| ||| |
|
|
| T |
12159899 |
agcgtgattaaatagaaaggaataaaggtataaatgtaccgtgattccttgatgagaagttgtacaagattaaaagttgctttacaaacaacaacccttg |
12159998 |
T |
|
| Q |
101 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaa----aagtagggtgattaaaaca-ggaaaaacttg----aagga |
191 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||| |||| ||| | | |||| ||||| | || | ||||||||||| ||||| |
|
|
| T |
12159999 |
taaaaaaggttgaaagtggggcacatgaaatgaataaaattagataaagcacattaaggtacgtagcgtgataagaatagggaaaaacttgcagaaagga |
12160098 |
T |
|
| Q |
192 |
atagatgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcac |
291 |
Q |
| |
|
||| |||| |||| ||||||||||||||||| | | ||||| || ||| |||| |||||| ||||||||||||||||||| ||||||| ||| ||| |
|
|
| T |
12160099 |
atatatgtcgcgtggttcaatagaaaggaataaaattttaaatatatcgtgattccatgatgagaagtgggaaaagattaaaagtggctctaaaaaccac |
12160198 |
T |
|
| Q |
292 |
cacccatatggaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaa |
347 |
Q |
| |
|
||||| || |||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12160199 |
caccctcatataaaaggttgaaagtggggcacatgaaatgaataaaattagagaaa |
12160254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 12153788 - 12154135
Alignment:
| Q |
4 |
gtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaatag |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| || | |||||| ||||||| | | | ||||||||| |||| |||| |
|
|
| T |
12153788 |
gtgattcaatagaaaggaataaaggtataaatgtaccatgattccttgatgagaaatgtgaaaagattaaaagcgcctcgacaaaccaccacccccatag |
12153887 |
T |
|
| Q |
104 |
aaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaacagg---aaaaa--cttgaaggaatagatg |
198 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||||||| |||| ||| ||| | | |||||| |||| | ||||| | |||||||||||| |
|
|
| T |
12153888 |
aaaaggttgaacgtagggcacatgaaatgaataaaattagagaaagcacataaaggctgcatgattagaacatgcataaaaatgcaaaaaggaatagatg |
12153987 |
T |
|
| Q |
199 |
tagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcaccacccat |
298 |
Q |
| |
|
|||||| |||||| ||||| |||| | |||||||| || || |||| ||||||| || |||||||||||||||| ||||||| ||| ||| | || |
|
|
| T |
12153988 |
tagcgtgattcaaaagaaattaata-aagtataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaatcccc |
12154086 |
T |
|
| Q |
299 |
atggaaaatgttgaaagtggggcaaacaaaatgaataaaattagagaaa |
347 |
Q |
| |
|
|| ||||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12154087 |
atagaaaaggttgaaagtggggcatatgaaatgaataaaattagagaaa |
12154135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 347
Target Start/End: Original strand, 12160148 - 12160451
Alignment:
| Q |
42 |
tgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaatagaaaaggttgaaagtggggcacatgaaattaataaaatt |
141 |
Q |
| |
|
||||||| |||||| |||| ||||||| ||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12160148 |
tgattccatgatgagaagtgggaaaagattaaaagtggctctaaaaaccaccaccctcatataaaaggttgaaagtggggcacatgaaatgaataaaatt |
12160247 |
T |
|
| Q |
142 |
agaaaaagaacacaaaagtagggtgattaaaacaggaaaaacttgaaggaatagatgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgt |
241 |
Q |
| |
|
||| |||| ||| ||| ||| |||||| |||| | || |||||||| | |||| || |||||||||||| ||||| | |||||||| || || |
|
|
| T |
12160248 |
agagaaagcacataaaggtaacttgattagaaca--tattgctgaaaggaatatacgtagtgtgattcaatagaaaagaataaatgtataaatatattgt |
12160345 |
T |
|
| Q |
242 |
cattcgttgatgataagtgggaaaagattaaaaatggctcttcaaatcaccacccatatggaaaatgttgaaagtggggcaaacaaaatgaataaaatta |
341 |
Q |
| |
|
|||| ||||||| |||||||||||||||| | ||||||| |||| |||||||| || | ||| ||||||||||||||| | ||| ||||||||||| |
|
|
| T |
12160346 |
gattccttgatgaggagtgggaaaagattaatagtggctctacaaaccaccacccccataggaaaggttgaaagtggggcacatgaaacgaataaaatta |
12160445 |
T |
|
| Q |
342 |
gagaaa |
347 |
Q |
| |
|
|||||| |
|
|
| T |
12160446 |
gagaaa |
12160451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 12160307 - 12160549
Alignment:
| Q |
4 |
gtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaatag |
103 |
Q |
| |
|
||||||||||||||| |||||| ||||||| || |||||||||||||| ||| ||||||| |||| |||||| ||||||||||| |||| |||| |
|
|
| T |
12160307 |
gtgattcaatagaaaagaataaatgtataaatatattgtgattccttgatgaggagtgggaaaagattaatagtggctctacaaaccaccacccccatag |
12160406 |
T |
|
| Q |
104 |
aaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaaca-ggaaaa----acttgaaggaatagatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| ||| ||| | || ||||||| |||| |||||| || |||||||| ||| |
|
|
| T |
12160407 |
gaaaggttgaaagtggggcacatgaaacgaataaaattagagaaaacacataaaggaagcgtgattagaacatggaaaaatctacaacaaggaatatatg |
12160506 |
T |
|
| Q |
199 |
tagcgtaattcaatagaaaggaatacaggtataaatgtaccgt |
241 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
12160507 |
tagcgtgattcaatagataggaataaaggtataaatgtaccgt |
12160549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 343
Target Start/End: Original strand, 12159373 - 12159639
Alignment:
| Q |
82 |
ctacaaaccacatccccaatagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaaca-ggaaa |
180 |
Q |
| |
|
|||||||||||| |||| ||||||| | ||||||||| | ||||||||| |||||||||||| |||| ||| ||| | | ||||||| || | ||||| |
|
|
| T |
12159373 |
ctacaaaccacaacccccgtagaaaaagctgaaagtggagtacatgaaatgaataaaattagagaaagcacatgaaatttgcgtgattataaaatggaaa |
12159472 |
T |
|
| Q |
181 |
aacttgaaggaa----tagatgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgtcattcgttgatgataagtgggaaaagattaaaaat |
276 |
Q |
| |
|
||| || || || || ||||||||| |||||||||||| ||||| ||||||||| ||||| | |||| ||||||| |||| ||||||| |||||| | |
|
|
| T |
12159473 |
aacgtgtagaaaaaaatatatgtagcgtgattcaatagaaacgaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagt |
12159572 |
T |
|
| Q |
277 |
ggctcttcaaatcaccacccatatggaaaatgttgaaagtggggcaaacaaaatgaataaaattaga |
343 |
Q |
| |
|
||| || |||| ||| ||| || ||||| ||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12159573 |
ggcactacaaaccacatccccaatagaaaaggttgaaagtggggcacatgaaattaataaaattaga |
12159639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12153989 - 12154136
Alignment:
| Q |
1 |
agcgtgattcaatagaaacaaataaaggtataaaagtaccatgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaa |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||| || |||||||||||||| || | ||||||| ||||||||||| ||| |||||||| ||| | |
|
|
| T |
12153989 |
agcgtgattcaaaagaaattaataaag-tataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaatcccca |
12154087 |
T |
|
| Q |
101 |
tagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaag |
149 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
12154088 |
tagaaaaggttgaaagtggggcatatgaaatgaataaaattagagaaag |
12154136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 12153261 - 12153370
Alignment:
| Q |
75 |
agtggcactacaaaccacatccccaatagaaaaggttgaaagtggggcacatgaaattaataaaattagaaaaagaacacaaaagtagggtgattaaaac |
174 |
Q |
| |
|
|||||| ||| |||||||| | || ||||||||| |||||| ||||| ||| ||||| |||||||||||| ||| ||| ||| |||| ||||||| ||| |
|
|
| T |
12153261 |
agtggctctaaaaaccacagcgcccatagaaaagattgaaaatggggtacaagaaatgaataaaattagataaaacacataaaggtagcgtgattagaac |
12153360 |
T |
|
| Q |
175 |
a-ggaaaaac |
183 |
Q |
| |
|
| |||||||| |
|
|
| T |
12153361 |
atggaaaaac |
12153370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 12154183 - 12154229
Alignment:
| Q |
187 |
aaggaatagatgtagcgtaattcaatagaaaggaatacaggtataaa |
233 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || || ||||||||| |
|
|
| T |
12154183 |
aaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataaa |
12154229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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