View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18764_low_15 (Length: 327)
Name: NF18764_low_15
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 10820656 - 10820754
Alignment:
| Q |
213 |
aaattatacttgtgactttcttacatacaattaatttcat-tttttaaataattacgcttggatcatttaaatttaggtattgatggacttcacttcat |
310 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820656 |
aaattataattgtggctttcttacctacaattactttcatatttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1607211 - 1607144
Alignment:
| Q |
19 |
caaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1607211 |
caaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagc |
1607144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1624232 - 1624165
Alignment:
| Q |
19 |
caaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1624232 |
caaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagc |
1624165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 1630207 - 1630130
Alignment:
| Q |
19 |
caaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagctggttagtta |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1630207 |
caaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagtta |
1630130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 10820072 - 10820149
Alignment:
| Q |
19 |
caaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagctggttagtta |
96 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10820072 |
caaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagtta |
10820149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 1630050 - 1629944
Alignment:
| Q |
213 |
aaattatacttgtgactttcttacat----acaattaatttcatttttta-----aataattacgcttggatcatttaaatttaggtattgatggacttc |
303 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630050 |
aaattatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttc |
1629951 |
T |
|
| Q |
304 |
acttcat |
310 |
Q |
| |
|
||||||| |
|
|
| T |
1629950 |
acttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 1606687 - 1606646
Alignment:
| Q |
269 |
cttggatcatttaaatttaggtattgatggacttcacttcat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606687 |
cttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 18785258 - 18785191
Alignment:
| Q |
19 |
caaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18785258 |
caaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagc |
18785191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University