View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_16 (Length: 317)
Name: NF18764_low_16
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_16 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 29819986 - 29820276
Alignment:
| Q |
18 |
caaaccagtcttgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29819986 |
caaaccagtcttgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaacctttttcctacggaaagagttttgtat |
29820085 |
T |
|
| Q |
118 |
tgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagat |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820086 |
tgtttttttgccatcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagat |
29820185 |
T |
|
| Q |
218 |
atctctctaacattttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgcctatgc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820186 |
atctctctaacattttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgcctatgc |
29820276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 29572046 - 29571756
Alignment:
| Q |
18 |
caaaccagtcttgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtat |
117 |
Q |
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||||||| ||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29572046 |
caaaccaatcttgtttcccaaccaaattctccaactggtttagttcattcacatcatcaagaacaagtagaaccttttttctgcataaagagttttgtat |
29571947 |
T |
|
| Q |
118 |
tgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagat |
217 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29571946 |
tgtttttttcccatcatacaaatcatgaaaatcattcctacttatactcagatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagat |
29571847 |
T |
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| Q |
218 |
atctctctaacattttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgcctatgc |
308 |
Q |
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| T |
29571846 |
atctctctaacattttctagaaagcaagtaagttcaaattcacatcggattgtttcatagaccgctctagcaatagttgacttgcctatgc |
29571756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 29828229 - 29828519
Alignment:
| Q |
18 |
caaaccagtcttgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtat |
117 |
Q |
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||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
29828229 |
caaaccaatcttgcttcccagccaaattctccaactgatttatttcattcacatcatcaagaacaagtagaaccttttttctgcataaagaattttgtat |
29828328 |
T |
|
| Q |
118 |
tgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagat |
217 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
29828329 |
tgtttttttgccatcatacaaattatgaaaatcatttctacttatacttagatgagaaagaagttgcctttgtatgtgaactaaaccatttgcctcagat |
29828428 |
T |
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| Q |
218 |
atctctctaacattttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgcctatgc |
308 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || || |||||||||||||||| ||| ||||||| |
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| T |
29828429 |
atctctctaacattttcaagaaagcaagtagtttgaaattcacattggattgcttcgtaaacagctctagcaatagttgtcttacctatgc |
29828519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 20990 - 20885
Alignment:
| Q |
79 |
aacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnn-gccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20990 |
aacaagtagaaccttttttctacggaaagagttttgtattgttttttttgccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
20891 |
T |
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| Q |
178 |
aagttg |
183 |
Q |
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|||||| |
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| T |
20890 |
aagttg |
20885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 11124204 - 11124282
Alignment:
| Q |
18 |
caaaccagtcttgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaaccttttt |
96 |
Q |
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||||||| |||||||||||||| | ||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||| |
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| T |
11124204 |
caaaccattcttgcttcccagctaaattctccaattggcttaattcgctcacatcatcaagaacaagaagaaccttttt |
11124282 |
T |
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