View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_18 (Length: 276)
Name: NF18764_low_18
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_18 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 44465117 - 44464852
Alignment:
| Q |
1 |
cgtttcctaattccaaacactccaacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcg |
100 |
Q |
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| T |
44465117 |
cgtttcctaattccaaacactccaacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcg |
44465018 |
T |
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| Q |
101 |
gagaaagcttcttcagagtaatcaagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaat |
200 |
Q |
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| T |
44465017 |
gagaaagcttcttcagagtaatcaagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaat |
44464918 |
T |
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| Q |
201 |
gatgctattgctgcagctccaaataaatctgtttctagtgatggatattttttgacctatgctact |
266 |
Q |
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| T |
44464917 |
gatgctattgctgcagctccaaataaatctgtttctagtgatggatattttttgatctatgttact |
44464852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 44489338 - 44489274
Alignment:
| Q |
162 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataa |
226 |
Q |
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| T |
44489338 |
gttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataa |
44489274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 44476165 - 44476110
Alignment:
| Q |
153 |
attgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctat |
208 |
Q |
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| T |
44476165 |
attgtgattgttaatcaagatggaagtggaaattttacaacaattaatgatgctat |
44476110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 24061911 - 24061826
Alignment:
| Q |
162 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttctagtgatggata |
247 |
Q |
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| T |
24061911 |
gttagtcaagatggaagtggaaacttcaccactatcaatgatgcaatagctgctgcaccaaataacacggttgctagtgatggata |
24061826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 39450329 - 39450439
Alignment:
| Q |
137 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
236 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
39450329 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39450428 |
T |
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| Q |
237 |
agtgatggata |
247 |
Q |
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| T |
39450429 |
agtgatggata |
39450439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 39471201 - 39471311
Alignment:
| Q |
137 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
236 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
39471201 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39471300 |
T |
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| Q |
237 |
agtgatggata |
247 |
Q |
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| T |
39471301 |
agtgatggata |
39471311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 3292 - 3182
Alignment:
| Q |
137 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
236 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
3292 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
3193 |
T |
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| Q |
237 |
agtgatggata |
247 |
Q |
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| T |
3192 |
agtgatggata |
3182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 19475227 - 19475265
Alignment:
| Q |
170 |
agatggaagtggaaactttaccacgattaatgatgctat |
208 |
Q |
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|||||||||||||||||||| ||| |||||||||||||| |
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| T |
19475227 |
agatggaagtggaaactttagcactattaatgatgctat |
19475265 |
T |
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