View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18764_low_2 (Length: 782)
Name: NF18764_low_2
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 697; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 16 - 777
Target Start/End: Complemental strand, 29283112 - 29282351
Alignment:
| Q |
16 |
tttccaacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29283112 |
tttccaacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtg |
29283013 |
T |
|
| Q |
116 |
ttctagttttccactctgggcatccagttccaatttgaaaatgcagggtttgattaaatctccgccgattaagaatcttttcatcatccatatgtctccg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29283012 |
ttctagttttccactctgggcatccagttccaatttgaaaatgcagggtttgattaaatctctgccgattaagaatcttttcatcatccatatgtctctg |
29282913 |
T |
|
| Q |
216 |
gtcaatgatttcacaaaataagcacgcccattataagtacgcccataagaatatagttctggaggnnnnnnntatggagtactagccatcttctcatagt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29282912 |
gtcaatgatttcacaaaataagcacgcccattataagtacgcccataagaatatagttctggaggaaaaaaatatggagtactagccatcttctcatagt |
29282813 |
T |
|
| Q |
316 |
aggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatcaggcctttataaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282812 |
aggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatcaggcctttataaaa |
29282713 |
T |
|
| Q |
416 |
tacaacatcagtgaaagaaaattcatttgtgttaacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaattgtaaatcactgca |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282712 |
tacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaattgtaaatcactgca |
29282613 |
T |
|
| Q |
516 |
accacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggtggcagactaatgggagctaccctactcttaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
29282612 |
accacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggtggcagactaatgggagctatactacacttaa |
29282513 |
T |
|
| Q |
616 |
aaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaaacaatttcattgtattgatggaaggatggga |
715 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29282512 |
aaggattcactagagttatggcattgttatcatccaccaatgcaagccaaccatggctacagcctaaacacaatttcattgtattgatggaaggatggga |
29282413 |
T |
|
| Q |
716 |
gaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282412 |
gaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
29282351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 683
Target Start/End: Complemental strand, 29288551 - 29287896
Alignment:
| Q |
16 |
tttccaacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtg |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
29288551 |
tttccaacttggagaaagcagaggccggcacagaaatggaatcaccaacacttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctg |
29288452 |
T |
|
| Q |
116 |
ttctagttttccactctgggcatccagttccaatttgaaaatgcagggtttgattaaatctccgccgattaagaatcttttcatcatccatatgtctccg |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| | ||||| |||| |||| | ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
29288451 |
ttcaagttttccactctgggcatccagttccaatttgaaaacgtagggtctgatcaaattttttccggttaagaatcttctcatcatccatatgtctccg |
29288352 |
T |
|
| Q |
216 |
gtcaatgatttcacaaaataagcacgcccattataagtacgcccataagaatatagttctggaggnnnnnnntatggagtactagccatcttctcatagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
29288351 |
gtcaatgatttcacaaaataagcacg---------------cccataataatattgttctggaaaccaaat---tggtgtactagccatcttctcatagt |
29288270 |
T |
|
| Q |
316 |
aggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatcaggcctttataaaa |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
29288269 |
aggcaaaattaggatcaaatgagtcatcagaagaaggattgttcagcttgaaggatacaatggtatctgtgttatcagcaaatatcaggcctttataaaa |
29288170 |
T |
|
| Q |
416 |
tacaacatcagtgaaagaaaattcatttgtgttaacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaattgtaaatcactgca |
515 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29288169 |
tacaacaccagtgaaagaaaattcatttgtgtttacacgaatccaaaatgattggcttggtcttttgaaagcgagagaactaaaattgtaaatcactgca |
29288070 |
T |
|
| Q |
516 |
accacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgaga------gatttgagaggtggcagactaatgggagctaccctac |
609 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||| ||||||||| |||||||||||||||| || | |
|
|
| T |
29288069 |
accacataatcacttgggcttgtaatggggtcatcagacaaggtaaccttttcaagagatctggattcgagaggtggtagactaatgggagctatactgc |
29287970 |
T |
|
| Q |
610 |
tcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaa |
683 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| ||| ||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
29287969 |
tcttaaaaggattcactagagttatagcattgttattatccactagtgcaagccaaccatggctacaacccaaa |
29287896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 288 - 770
Target Start/End: Complemental strand, 29270467 - 29269982
Alignment:
| Q |
288 |
tatggagtactagccatcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatct-gt- |
385 |
Q |
| |
|
||||||||| |||| ||||||||| ||| | ||||||| |||||| |||||||||| ||| ||||||||| || ||||||||||||||| ||| || |
|
|
| T |
29270467 |
tatggagtaatagctatcttctcaaggtaagtaaaattaagatcaattgagtcatcacaaggaggattgtttaatttgaaggatacaatgaagtcttgtt |
29270368 |
T |
|
| Q |
386 |
-gctatcaacaaatatcaggcctttataaaatacaacatcagtgaaagaaaattcatttgtgttaacacgaatccaaaatgactggcttggtcttttgaa |
484 |
Q |
| |
|
||| || |||||| || ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29270367 |
cgctgtccgcaaataccaagccttcataaaatacaacattagtgaaagaaaattcatttgtgtctgcacgaatccaaaaagactggcttgctcttttgaa |
29270268 |
T |
|
| Q |
485 |
agcgagagaaccaaaattgtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggt |
584 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
29270267 |
agcgagagaaccaaaattgtaaatcgctgcaaccacataatcacttgggcttgtaatggggtcagcagacaaggtaaccttgttgagagattcgagatgt |
29270168 |
T |
|
| Q |
585 |
ggcagactaatgggagctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaa |
684 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | | ||||| | ||||||||||||||||||||| || ||| |
|
|
| T |
29270167 |
ggcagactaatgggagctatactgctcttaaaaggattcactagagttatggcattgtttttatccactagtgcaagccaaccatggctacaacctaaac |
29270068 |
T |
|
| Q |
685 |
acaatttcattgtattgatggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttcttt |
770 |
Q |
| |
|
| ||| || || |||||||||||||||| || ||||||||||| |||||| |||| ||||| |||| |||||| || ||||| |
|
|
| T |
29270067 |
atgttttacttttaatgatggaaggatgggataactgaatagggtactctttcgcacttgggatactatataatgatttcatcttt |
29269982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 28612154 - 28612268
Alignment:
| Q |
35 |
agaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttctagttttccactctgg |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28612154 |
agaggctggcacagaaattgaatcaccaa---ttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactctgg |
28612250 |
T |
|
| Q |
135 |
gcatccagttccaatttg |
152 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28612251 |
acatccagttccaatttg |
28612268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 565
Target Start/End: Original strand, 28612508 - 28612672
Alignment:
| Q |
401 |
caggcctttataaaatacaacatcagtgaaagaaaattcatttgtgttaacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || ||| ||| || ||||||||||||| ||| ||| | |||||||||| ||| ||||| |
|
|
| T |
28612508 |
caggcctttataaaatacaacatcattgaaagaaaactcttttttgtctactcgaatccaaaatggttggtttgctgttttgaaagcaagacgcccaaag |
28612607 |
T |
|
| Q |
501 |
ttgtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctt |
565 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28612608 |
ccgtaaatggctgcaacgacataatcatttgggcttgtaatggggtcagcagacaaggtaacctt |
28612672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 614 - 777
Target Start/End: Complemental strand, 29279541 - 29279375
Alignment:
| Q |
614 |
aaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcc---caaaaacaatttcattgtattgatggaagga |
710 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| || || ||||||||||||||||||||||| || |||| ||| ||| || | ||||||||||| |
|
|
| T |
29279541 |
aaaaggattcactagagttatgacattgttatcgtctactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
29279442 |
T |
|
| Q |
711 |
tgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
777 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| ||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
29279441 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcgtctgtg |
29279375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 28621861 - 28621780
Alignment:
| Q |
297 |
ctagccatcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatgg |
378 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
28621861 |
ctagctatcttctcatagtaagtaaaattagggtcatatgagtcatcacaaggaggattgttgaacttgaaggatataatgg |
28621780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 29270724 - 29270500
Alignment:
| Q |
16 |
tttccaacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtg |
115 |
Q |
| |
|
|||| ||||| |||||| || ||||| |||||| ||||||||||| | ||||||||||||||||| ||| || |||||||||||||| || || || |
|
|
| T |
29270724 |
tttcaaactttgagaaacaagcggctgacacagaaattgaatcaccga---ttccgacaaataaaatgttgttctctaaactctcaagtttttttatttg |
29270628 |
T |
|
| Q |
116 |
ttctagttttccactctgggcatccagttccaatttgaaaatgcagggtttg-attaaa-----tctccgccgattaagaatcttttcatcatccatatg |
209 |
Q |
| |
|
||| | |||||| |||||||| |||| ||||| |||||||| | || ||||| || || | | | ||||||| ||||||||| ||||||| || |
|
|
| T |
29270627 |
ttcaacttttccgctctgggcgtccatttccattttgaaaacgtagagtttgtatgtaagattgtgtgggtcgattaaacatcttttcaccatccatgtg |
29270528 |
T |
|
| Q |
210 |
tctccggtcaatgatttcacaaaataag |
237 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
29270527 |
tctccagtcaatgatttcacaaaataag |
29270500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 29275537 - 29275448
Alignment:
| Q |
67 |
ttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttctagttttccactctgggcatccagttccaatttgaaaa |
156 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||||||||| || ||||| | |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
29275537 |
ttccaacaaataaaatgttgctttccaaactctcaagtttgttgatttgttcaactttttcgctctgggcgtccagttccaatttgaaaa |
29275448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 28623388 - 28623327
Alignment:
| Q |
67 |
ttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttctagttttcca |
128 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
28623388 |
ttccaacaaaaaaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcca |
28623327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 565
Target Start/End: Complemental strand, 28621667 - 28621613
Alignment:
| Q |
511 |
ctgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctt |
565 |
Q |
| |
|
||||||| ||||||||| |||| |||| || |||||||||||||||||||||||| |
|
|
| T |
28621667 |
ctgcaacgacataatcatttggacttgaaatggggtcagcagacaaggtaacctt |
28621613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 28615569 - 28615438
Alignment:
| Q |
21 |
aacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttcta |
120 |
Q |
| |
|
|||||||||||| |||||| | |||||| | ||||| |||| | || || |||||||||| ||||| ||||||||| ||| ||||||| ||| | | |
|
|
| T |
28615569 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactcttaagcatgttcatttgtacaa |
28615470 |
T |
|
| Q |
121 |
gttttccactctgggcatccagttccaatttg |
152 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |
|
|
| T |
28615469 |
gttttccactcttggtgtccagtttcaatttg |
28615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 28615394 - 28615353
Alignment:
| Q |
190 |
atcttttcatcatccatatgtctccggtcaatgatttcacaa |
231 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
28615394 |
atcttttcaccatccatatgtctccattcaatgatttcacaa |
28615353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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