View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_27 (Length: 233)
Name: NF18764_low_27
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 40892478 - 40892694
Alignment:
| Q |
12 |
gataagaaagaaaagttccaatgttaatctcgcaccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtgtttttgttagaat |
111 |
Q |
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| T |
40892478 |
gataagaaagaaaagttcccatgttaatctcgcaccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtgtttttgttagaat |
40892577 |
T |
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| Q |
112 |
ttcgacggtattaagcc--------atgtttgatgttatatcttttggaagttcaacccaattagggtttgttgtgctctcaaatttgtgtttcttcgct |
203 |
Q |
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| T |
40892578 |
ttcgactgtattaagcctttgaagtatgtttgatgttatatcttttggaagttcaacccaattagggttttttgtgctctcaaatttgtgtttcttcgct |
40892677 |
T |
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| Q |
204 |
ggagaagaagacattgc |
220 |
Q |
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| T |
40892678 |
ggagaagaagacattgc |
40892694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 38284563 - 38284397
Alignment:
| Q |
21 |
gaaaagttccaatgttaatctcgcaccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtgtttttgttagaatttcgacggt |
120 |
Q |
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| T |
38284563 |
gaaaagttcccatttgaatttcacgccacatgaaaggatctttgcaaatgttccaccaatacggacacacattgcgtgcatttgtaagaatttcaacagc |
38284464 |
T |
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| Q |
121 |
attaagcc--------atgtttgatgttatatcttttggaagttcaacccaattagggtttgttgtg |
179 |
Q |
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| T |
38284463 |
accgagccttttgagaatgtttgatgttaagtctttgggaagttcaagccaattagggtttgttgtg |
38284397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 30624070 - 30624154
Alignment:
| Q |
27 |
ttccaatgttaatctcgcaccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtgtttttgttagaat |
111 |
Q |
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| T |
30624070 |
ttcccatgtgaatcttgcgccacatgaaaggatctttgcaaatattccaccaataaggacacacatagcgtgcctttgtgagaat |
30624154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 30223172 - 30223120
Alignment:
| Q |
46 |
ccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtg |
98 |
Q |
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| T |
30223172 |
ccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtg |
30223120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 30230413 - 30230342
Alignment:
| Q |
46 |
ccacatgaaaggatctttgcaaatgttccaccaataaggacacacatagcgtgtttttgttagaatttcgac |
117 |
Q |
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| T |
30230413 |
ccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttcgac |
30230342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 29721155 - 29721122
Alignment:
| Q |
59 |
tctttgcaaatgttccaccaataaggacacacat |
92 |
Q |
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| T |
29721155 |
tctttgcaaatgttccaccaataaggacacacat |
29721122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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