View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_3 (Length: 609)
Name: NF18764_low_3
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 44559618 - 44560209
Alignment:
| Q |
1 |
tctacaccatcaaaatattcaccttccaattgccatctccataccgaccaaatcagagattatccattttctaatgtcatcgtgaacttgcaccatgcaa |
100 |
Q |
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| T |
44559618 |
tctacaccatcaaaatattcaccttccaattgccatctccatatcgaccaaatcagagactatccattttctcatgtcatcgtgaacttgcaccatgcaa |
44559717 |
T |
|
| Q |
101 |
tcagctaaaataatgttgccacctgtcatttgtgatttgttttctccagacattaactgatcgcacatcaccgactcagaatgactaatactagtccaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559718 |
tcagctaaaataatgttgccacctgtcatttgtgatttgttttctccaaacattaactgatcgcacatcaccgactcagaatgactaatactagtccaag |
44559817 |
T |
|
| Q |
201 |
tgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacactgcacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559818 |
tgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacactgcacca |
44559917 |
T |
|
| Q |
301 |
caagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaaggaaactcttagcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559918 |
caagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaaggaaactcttagcc |
44560017 |
T |
|
| Q |
401 |
ttctaacccgaaagtttggactttactttatcaatcaaattatcgtagtcactctagcgcggagctctaccaatcaaagggacttggttttcgaaaccta |
500 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44560018 |
ttctaacccgaaagtttcgactttactttatcaatcaaattaccgtagtcactctagcgcggagctctaccaatcaaagggacttggttttcgaaaccta |
44560117 |
T |
|
| Q |
501 |
tttccttcaaacacaacattatcatcatctctactctcagtaaactatctttatagaagttagtcatcgtatcctttagctccgtatcatct |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44560118 |
tttccttcaaacacaacattatcatcatctctactctcagtaaactatctttatagaagttagtcaccgtatcctttagctccgtatcatct |
44560209 |
T |
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