View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_30 (Length: 226)
Name: NF18764_low_30
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 9635857 - 9636059
Alignment:
| Q |
9 |
caacgaccattttgtttcattcttccctcaaannnnnnnncattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttgataaataa |
108 |
Q |
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| T |
9635857 |
caacgacaattttgtttcattcttccctcaatttttttttcattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttggtaaataa |
9635956 |
T |
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| Q |
109 |
atatatagtatgtccctattttgcaattgtatgttgtacgctcatgtttaaatagtttataaaatatttcgaaatactacaatttttatccgggggaaat |
208 |
Q |
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| T |
9635957 |
atatatagtatgtccctattttgcaattgtatgttgtacgctcatgtttaaatagtttataaaatatttcgaaatactacaatttttatccgggggaaat |
9636056 |
T |
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| Q |
209 |
act |
211 |
Q |
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||| |
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| T |
9636057 |
act |
9636059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 18370655 - 18370818
Alignment:
| Q |
49 |
cattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttgataaataaatatatagtatgtccctattttgcaattgtatgttgtacg |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| | |
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| T |
18370655 |
cattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttggtaaataaatatatagtatgtccctattttccaattgtatgtcgtatg |
18370754 |
T |
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| Q |
149 |
ctcatgtttaaatagtttataaaata-tttcgaaatactacaatttttatccgggggaaatact |
211 |
Q |
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| T |
18370755 |
ctcatgttaaaatagtttataaaatattttcgaaatactacactttttttccaggggaaatact |
18370818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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