View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18764_low_4 (Length: 565)

Name: NF18764_low_4
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18764_low_4
NF18764_low_4
[»] chr3 (20 HSPs)
chr3 (1-351)||(26529550-26529900)
chr3 (351-530)||(37742723-37742899)
chr3 (352-527)||(44380252-44380427)
chr3 (354-521)||(33509684-33509851)
chr3 (429-524)||(50934501-50934596)
chr3 (379-525)||(47426350-47426496)
chr3 (462-532)||(32319473-32319543)
chr3 (459-527)||(10179868-10179936)
chr3 (429-525)||(47186175-47186271)
chr3 (356-527)||(35094544-35094717)
chr3 (429-525)||(31187145-31187241)
chr3 (459-527)||(10018671-10018739)
chr3 (429-525)||(42664673-42664769)
chr3 (352-527)||(17466271-17466446)
chr3 (429-525)||(34029366-34029462)
chr3 (373-523)||(39498689-39498838)
chr3 (459-527)||(10123211-10123279)
chr3 (352-406)||(19619217-19619271)
chr3 (472-524)||(21963073-21963125)
chr3 (470-510)||(25859037-25859077)
[»] chr2 (14 HSPs)
chr2 (353-527)||(34392080-34392254)
chr2 (352-527)||(7381690-7381864)
chr2 (351-511)||(23863800-23863958)
chr2 (82-236)||(43779399-43779553)
chr2 (352-527)||(37357915-37358094)
chr2 (429-527)||(21603957-21604055)
chr2 (351-502)||(4779608-4779759)
chr2 (352-530)||(4775629-4775808)
chr2 (351-415)||(21606149-21606213)
chr2 (352-504)||(25275620-25275771)
chr2 (371-520)||(14565870-14566019)
chr2 (352-494)||(41095784-41095926)
chr2 (466-525)||(37811091-37811150)
chr2 (351-387)||(919447-919483)
[»] chr5 (17 HSPs)
chr5 (353-527)||(19357261-19357434)
chr5 (352-527)||(11607532-11607707)
chr5 (352-520)||(33858536-33858704)
chr5 (351-525)||(1826259-1826433)
chr5 (391-527)||(39570080-39570216)
chr5 (429-527)||(9827786-9827884)
chr5 (352-509)||(33271630-33271787)
chr5 (429-525)||(38010689-38010785)
chr5 (429-525)||(13015381-13015477)
chr5 (429-525)||(29989962-29990058)
chr5 (75-217)||(35868428-35868569)
chr5 (458-525)||(13086753-13086820)
chr5 (429-525)||(13478120-13478216)
chr5 (83-172)||(29374536-29374625)
chr5 (376-470)||(42148201-42148295)
chr5 (429-524)||(13421085-13421180)
chr5 (352-388)||(9827903-9827939)
[»] chr4 (18 HSPs)
chr4 (352-525)||(12473704-12473877)
chr4 (352-525)||(12528113-12528286)
chr4 (358-527)||(35869575-35869744)
chr4 (352-527)||(22343335-22343510)
chr4 (377-524)||(33249397-33249544)
chr4 (354-524)||(52910050-52910219)
chr4 (352-527)||(51811912-51812087)
chr4 (369-527)||(21260792-21260950)
chr4 (352-527)||(55590480-55590644)
chr4 (429-525)||(52012778-52012874)
chr4 (439-533)||(34829168-34829262)
chr4 (429-525)||(9799438-9799534)
chr4 (83-183)||(34934150-34934250)
chr4 (466-521)||(49998486-49998541)
chr4 (352-421)||(1796654-1796723)
chr4 (429-524)||(49999663-49999758)
chr4 (351-413)||(35781021-35781083)
chr4 (484-527)||(33174516-33174560)
[»] chr1 (14 HSPs)
chr1 (352-525)||(2569037-2569209)
chr1 (354-525)||(29119324-29119495)
chr1 (356-527)||(32676134-32676305)
chr1 (351-525)||(46435462-46435624)
chr1 (376-527)||(8462127-8462277)
chr1 (429-525)||(8809715-8809811)
chr1 (432-527)||(25161307-25161402)
chr1 (453-527)||(7214510-7214584)
chr1 (352-411)||(15387156-15387215)
chr1 (136-236)||(8382284-8382384)
chr1 (476-524)||(16679821-16679868)
chr1 (466-525)||(35998252-35998311)
chr1 (353-388)||(36771533-36771568)
chr1 (122-183)||(7608541-7608602)
[»] chr6 (8 HSPs)
chr6 (351-524)||(1211841-1212014)
chr6 (352-525)||(5403874-5404047)
chr6 (352-527)||(32644836-32645009)
chr6 (460-530)||(11753162-11753232)
chr6 (429-525)||(34245567-34245663)
chr6 (351-396)||(10503256-10503301)
chr6 (432-524)||(11113557-11113649)
chr6 (370-421)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (352-527)||(35341534-35341709)
chr7 (352-525)||(48250154-48250329)
chr7 (352-527)||(48072387-48072560)
chr7 (352-501)||(32694568-32694717)
chr7 (432-521)||(31306951-31307041)
chr7 (370-421)||(40856949-40857000)
chr7 (466-524)||(36776062-36776120)
chr7 (429-525)||(40893116-40893213)
chr7 (461-525)||(40856392-40856456)
[»] chr8 (11 HSPs)
chr8 (351-525)||(24337827-24338001)
chr8 (87-246)||(25843013-25843172)
chr8 (80-244)||(29282562-29282727)
chr8 (352-527)||(11254026-11254200)
chr8 (358-533)||(41179567-41179742)
chr8 (352-518)||(18168392-18168559)
chr8 (352-518)||(18631949-18632116)
chr8 (375-517)||(4708328-4708470)
chr8 (429-525)||(1514803-1514899)
chr8 (87-211)||(42351691-42351815)
chr8 (473-524)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (352-524)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (352-527)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (352-527)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (476-524)||(23094-23142)
scaffold0263 (429-524)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (429-525)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 26529550 - 26529900
Alignment:
Q  1 tggcataaaaaattgatagtaaaatgcatattccagtactaccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgc 100  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26529550 tggcataaaaaatggatagtaaaatgcatattccagtactcccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgc 26529649  T
Q  101 gatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattt 200  Q
    | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26529650 ggtggcacaggttttcttgcatcccaaggcaaaaattgtcgtgatttggacaacctaacatatgtagcttcacaacaaacgtgaccacctgccgtgattt 26529749  T
Q  201 tgccttaatgtagaaatgacaccacatagccaaacaaacacttacaagatctcaacgatcatagtcaataaatatgtaaggacccaattttttgttatgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  26529750 tgccttaatgtagaaatgacaccacatagccaaacaaacacttaaaagatctcaacgatcatagtcaataaatatgcaaggacccaattttttggtatgg 26529849  T
Q  301 atatttttccttcaattagcaaaaccctttactttactcatgcaagaatgg 351  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  26529850 atatttttccttcaattagcaaaaccatttacttcactcattcaagaatgg 26529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 351 - 530
Target Start/End: Complemental strand, 37742899 - 37742723
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||       ||||||||||||||||||||||    
T  37742899 gggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggta 37742800  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 530  Q
    |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||    
T  37742799 atgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaaccc 37742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 44380427 - 44380252
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     ||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaa 44380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 521
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  354 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 453  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| |||||| || |||||||| |||||       || ||||||||||||||   ||| |    
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  454 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 521  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 524
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||||||||| |||||  ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 379 - 525
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  379 tataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactcta 478  Q
    ||||||||||  |||||| |||||  || ||||||||||||||       |||||||||||||||||   ||| |||| |||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  479 attggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 462 - 532
Target Start/End: Original strand, 32319473 - 32319543
Alignment:
Q  462 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaacccca 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatccca 32319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 10179868 - 10179936
Alignment:
Q  459 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaa 10179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 527
Target Start/End: Complemental strand, 35094717 - 35094544
Alignment:
Q  356 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 455  Q
    |||| ||||||| ||||||||||| || |||||| |||||| ||||||||||||| |||| |||||       |||||||||||||  |||  ||| |||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  456 atattggtaggtggcacactc--taattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    | |||||||||||||| ||||  ||||| | ||||||||||||||| |||||| ||||||||||  ||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaa 35094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 10018671 - 10018739
Alignment:
Q  459 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaa 10018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  |||  ||| ||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 17466446 - 17466271
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaa 17466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 523
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  373 atggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcac 472  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||       ||||| |||||||  |||  |||  ||| || | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  473 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 523  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 10123211 - 10123279
Alignment:
Q  459 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaa 10123279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 19619271 - 19619217
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtca 406  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  472 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  470 cacactctaattggccaatggtatataccattggtacctta 510  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 353 - 527
Target Start/End: Original strand, 34392080 - 34392254
Alignment:
Q  353 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 452  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | |||| || ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  453 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaa 34392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 7381864 - 7381690
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||||||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaa 7381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 351 - 511
Target Start/End: Original strand, 23863800 - 23863958
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||||| |||||| || ||||||||||||||       ||||||||||||||||||  ||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 511  Q
    | |||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863900 aagtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 43779399 - 43779553
Alignment:
Q  82 atagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacg 181  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |  |||  ||||||||||||||  ||||||    
T  43779399 atagcttgtttggatgtgcgatggaacaagttttcttgcgtcccaaggcaaaaattgtcgtgatttggaaaggctactatatgtagcttcactgcaaacg 43779498  T
Q  182 tgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaaca 236  Q
    |||   |||||||||||||||  || |||| |||||| |||  || |||||||||    
T  43779499 tgagttcctgccgtgattttggtttgatgtggaaatggcactgcacagccaaaca 43779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 352 - 527
Target Start/End: Original strand, 37357915 - 37358094
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 447  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  448 gtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     ||| |||| |||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaa 37358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 429 - 527
Target Start/End: Complemental strand, 21604055 - 21603957
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    ||||||||||||| ||||  ||| |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 21603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 351 - 502
Target Start/End: Complemental strand, 4779759 - 4779608
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||       |||||||||||||| |||  ||    
T  4779759 gggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttata 4779660  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattg 502  Q
    | |||| |||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779659 aagtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 352 - 530
Target Start/End: Complemental strand, 4775808 - 4775629
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagca-ttggta 450  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | |||| || |||||||| |||||       ||||| ||||||| || ||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 530  Q
    | |||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| |||||| ||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtaccc 4775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca 415  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 504
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| |||||       |||||||||||||| |||   ||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt-taaa 25275718  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggt 504  Q
     |||| |||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275719 agtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 520
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  371 taatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 470  Q
    ||||| ||||||| |||| ||| ||| ||||||| || ||||||| |||||       |||||||||| ||| | |  |||  ||||||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  471 acactctaattggccaatggtatataccattggtaccttaatggtacaca 520  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 494
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   |||| || |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtata 494  Q
     |||| ||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  466 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 919447 - 919483
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccatt 387  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  919447 gggatagcacttgtgtaccataatggtttataccatt 919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 353 - 527
Target Start/End: Original strand, 19357261 - 19357434
Alignment:
Q  353 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 452  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  453 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaa 19357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 352 - 527
Target Start/End: Original strand, 11607532 - 11607707
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  |||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaa 11607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 352 - 520
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 520  Q
     |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 351 - 525
Target Start/End: Complemental strand, 1826433 - 1826259
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||||| |||||| || ||||||||  ||||       |||||||||||||||||    |    
T  1826433 gggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctaca 1826334  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1826333 aagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 527
Target Start/End: Original strand, 39570080 - 39570216
Alignment:
Q  391 caattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatgg 490  Q
    |||||| ||| ||||| ||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  491 tatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||||||||||| ||| |||||| |||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaa 39570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 429 - 527
Target Start/End: Complemental strand, 9827884 - 9827786
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||||||||||||  |||  ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaa 9827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 352 - 509
Target Start/End: Complemental strand, 33271787 - 33271630
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||| |||||| |||||||| || |||||       ||||||||||||||||||  | |    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatca 33271688  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtacctt 509  Q
     |||| |||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271687 agtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||||  |||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 35868569 - 35868428
Alignment:
Q  75 gtttcttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacg 174  Q
    |||||| |||||||||||||||||||| ||| |   | ||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||||      
T  35868569 gtttctaatagcttgtttggatgtgcggtggaagcagctttctcgcgtcccaaggcaaaaattgccgtgatttggaaaagctattatatgtagcttcagt 35868470  T
Q  175 acaaacgtgaccacctgccgtgattttgccttaatgtagaaat 217  Q
      |||||||    ||||||||||||||||||| |||| |||||    
T  35868469 gtaaacgtg-gttcctgccgtgattttgccttgatgtggaaat 35868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 525
Target Start/End: Complemental strand, 13086820 - 13086753
Alignment:
Q  458 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086820 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||||  |||  ||| |||| | ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 29374536 - 29374625
Alignment:
Q  83 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttca 172  Q
    ||||||||||||||||||| ||| |   | ||||| || ||||||||||||||||||||||||||||| || |||  ||||||| |||||    
T  29374536 tagcttgtttggatgtgcggtggaagcagctttctcgcatcccaaggcaaaaattgccgtgatttggaaaagctactatatgtaacttca 29374625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  376 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 470  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||       ||||||||||||| ||||  ||| |||| |||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 524
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||| ||||||||||||  ||| |||| |||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattg 388  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 358 - 527
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  358 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 457  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||  ||  ||||     
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  458 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 22343510 - 22343335
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||| ||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaa 22343335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 524
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  377 tatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactc 476  Q
    |||||| ||||| ||||||| | |||| || ||||||||||||||       ||||||||||||||||||  ||| |||| ||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  477 taattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 354 - 524
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  354 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 453  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||| ||||||||| ||| |||       | ||||||||||||||||  ||| |    
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  454 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 51812087 - 51811912
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||||||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaa 51811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 21260950 - 21260792
Alignment:
Q  369 cataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtg 468  Q
    |||||||||||||| ||||   |||||| |||||| || ||||||||||||||       ||||||||||||| ||||  ||| |||| |||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  469 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaa 21260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 55590644 - 55590480
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||| ||| ||||||||||||| ||||||  |||||| |||||||||||||||||| |||||       ||||||||||||||             
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag--------- 55590554  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
      ||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  55590553 --taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaa 55590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 439 - 533
Target Start/End: Original strand, 34829168 - 34829262
Alignment:
Q  439 aaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 533  Q
    ||||||||  ||| |||| ||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| || |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcccaa 34829262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||| ||||||| ||||  ||| |||| ||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 34934250 - 34934150
Alignment:
Q  83 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgt 182  Q
    ||||||||||||||||||| ||| | | ||||||| ||||||||| ||||||||||| || ||||||| || |||  |||||||| |||||  |||||||    
T  34934250 tagcttgtttggatgtgcggtggaataagttttctcgcgtcccaaagcaaaaattgcagttatttggaaaagctactatatgtagtttcactgcaaacgt 34934151  T
Q  183 g 183  Q
    |    
T  34934150 g 34934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  466 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 521  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 421  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 524
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||||||||||||||||  |||  ||| ||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 35781083 - 35781021
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggca 413  Q
    |||||| |||||| ||| ||||||||||||||||||||  |||||| |||||| |||||||||    
T  35781083 gggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 33174560 - 33174516
Alignment:
Q  484 ccaatggtatataccattggta-ccttaatggtacacaagtggaa 527  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaa 33174516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||| ||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 354 - 525
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  354 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 453  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| |||||| || ||||||||||||||       |||||||||||||||||   ||| |    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  454 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 356 - 527
Target Start/End: Complemental strand, 32676305 - 32676134
Alignment:
Q  356 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 455  Q
    |||| |||||||  |||||||||||||||||||| |||||| | |||| || ||||||||  ||||       ||||||||||||||||||  ||| |||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  456 atattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    | ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 32676134  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 525
Target Start/End: Original strand, 46435462 - 46435624
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    ||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||| ||| ||||||||||       |||||||||||||||||   ||    
T  46435462 gggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctata 46435561  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46435562 a------------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 527
Target Start/End: Complemental strand, 8462277 - 8462127
Alignment:
Q  376 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacact 475  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||       ||||| ||||||| ||||  |||  ||| ||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  476 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     ||||||  ||||| |||||||||||||||| |||||  |||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaa 8462127  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 432 - 527
Target Start/End: Complemental strand, 25161402 - 25161307
Alignment:
Q  432 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    |||||||||| ||||  ||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaa 25161307  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 527
Target Start/End: Original strand, 7214510 - 7214584
Alignment:
Q  453 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
    ||||||| | |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| |||||    
T  7214510 gtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaa 7214584  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 15387156 - 15387215
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtgg 411  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  15387156 ggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 8382284 - 8382384
Alignment:
Q  136 ttgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaac 235  Q
    ||||||||||| ||| || |||  ||| ||||||||||  |||||||||   ||||||||||||||| ||| |||| |||||| |||| || ||||||||    
T  8382284 ttgccgtgattcggaaaagctactatacgtagcttcactgcaaacgtgagttcctgccgtgattttggcttgatgtggaaatggcaccgcacagccaaac 8382383  T
Q  236 a 236  Q
    |    
T  8382384 a 8382384  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 524
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  476 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 35998311 - 35998252
Alignment:
Q  466 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998311 gtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  353 gatagcacttgtgtaacataatggtatataccattg 388  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 7608541 - 7608602
Alignment:
Q  122 tcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtg 183  Q
    |||||||||||||||||  |||||||||| || |||  ||||||||||||||  ||||||||    
T  7608541 tcccaaggcaaaaattgatgtgatttggaaaagctactatatgtagcttcacagcaaacgtg 7608602  T

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Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 351 - 524
Target Start/End: Original strand, 1211841 - 1212014
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||| |||||| |||||||||||||||||       ||||||||||||||||| | ||    
T  1211841 gggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgata 1211940  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1211941 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 352 - 525
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
     |||| |||||||||||||| ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 352 - 527
Target Start/End: Original strand, 32644836 - 32645009
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| ||||||||| |||  |||    
T  32644836 ggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-ttaa 32644933  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| ||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| ||||||    
T  32644934 agtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaa 32645009  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 460 - 530
Target Start/End: Complemental strand, 11753232 - 11753162
Alignment:
Q  460 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 530  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggtaccc 11753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 10503256 - 10503301
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaatta 396  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503256 gggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 524
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  432 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||||||||||| |   || |||| ||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  370 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 421  Q
    |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 35341709 - 35341534
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaa 35341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 449  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  450 aatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    || |||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 48072560 - 48072387
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       || ||||||||||  |||  |||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataa 48072461  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
      ||| ||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||    
T  48072460 aataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaa 48072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 352 - 501
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccatt 501  Q
     |||| |||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 521
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  432 atcaaataaagcattggtaatgtaatattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 521  Q
    |||||||||||||||  ||| |||| |||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  370 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 421  Q
    ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  466 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 40893116 - 40893213
Alignment:
Q  429 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 40893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 525
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  461 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 351 - 525
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  351 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 450  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | ||||||||||||||       |||||||||||||||||   ||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    | |||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 25843172 - 25843013
Alignment:
Q  87 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 186  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||    
T  25843172 ttgtttggatgagcggtgccacaggttttcttgcatcccaaggcaaaaattgccgtgatttggaaacgctaccatgtgtagcttcactacaaacgtgacc 25843073  T
Q  187 acctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaca 246  Q
    |||||| |||||||||  || |||| ||||| |||||||| |||||||||| ||||||||    
T  25843072 acctgctgtgattttggtttgatgtggaaattacaccacacagccaaacaagcacttaca 25843013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 244
Target Start/End: Complemental strand, 29282727 - 29282562
Alignment:
Q  80 ttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaa---ttgccgtgatttggacaacctaacatatgtagcttcacgac 176  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||   ||  ||||||||||| || | | ||||||||||||||| ||    
T  29282727 ttatagcttgtttggatgtgcgatggtacaggttttctcgcgtcccaaggcaaaaaaaatt--cgtgatttggaaaagcaaccatatgtagcttcactac 29282630  T
Q  177 aaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacactta 244  Q
    ||| | |||||||||| |||||||||  || |||| |||||||||||||| |||||||||| ||||||    
T  29282629 aaatgcgaccacctgcagtgattttggtttgatgtggaaatgacaccacacagccaaacaagcactta 29282562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 352 - 527
Target Start/End: Original strand, 11254026 - 11254200
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 358 - 533
Target Start/End: Original strand, 41179567 - 41179742
Alignment:
Q  358 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 457  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||| || |||||||| || ||       ||||| ||||||| ||||  ||| ||||     
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  458 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 533  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcccaa 41179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 518
Target Start/End: Complemental strand, 18168559 - 18168392
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 450  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18168559 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18168460  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 518  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168459 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 518
Target Start/End: Complemental strand, 18632116 - 18631949
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 450  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18632116 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18632017  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 518  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632016 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 517
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  375 ggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacac 474  Q
    |||| |||||||||   ||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  475 tctaattggccaatggtatataccattggtaccttaatggtac 517  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 42351691 - 42351815
Alignment:
Q  87 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 186  Q
    |||||||||||||   ||| ||| ||||||| |||||| || |||||||||||||||||||| | || | |  ||||||||||||||  |||||||||      
T  42351691 ttgtttggatgtgtcgtggaacaagttttctcgcgtcctaaagcaaaaattgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaat 42351790  T
Q  187 acctgccgtgattttgccttaatgt 211  Q
     ||||||||||||||| ||| ||||    
T  42351791 tcctgccgtgattttggcttgatgt 42351815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 524
Target Start/End: Original strand, 32825954 - 32826005
Alignment:
Q  473 actctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 352 - 524
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 450  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||| ||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  451 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 34365 - 34192
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||| ||||||| ||||| |||||||| |||| | |||||| ||||||||||||| ||||||||||       |||||||||||||  |||  |||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataa 34268  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaa 34192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 352 - 527
Target Start/End: Complemental strand, 11367 - 11193
Alignment:
Q  352 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 451  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  452 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 527  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  476 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 524
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  429 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 524  Q
    |||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 73168 - 73071
Alignment:
Q  429 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 525  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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