View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_low_6 (Length: 452)
Name: NF18764_low_6
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 27404037 - 27404464
Alignment:
| Q |
18 |
attgttaaaatgatctctatccaatgtgtattgtttgtgtgatgtaaaactaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaattt |
117 |
Q |
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| T |
27404037 |
attgttaaaatgatctctatccaatgtgtattgtttgtgtgatgtaaaactaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaattt |
27404136 |
T |
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| Q |
118 |
aaaatcagaaaagacgcttccgatgctatagaagaacatatcgatgatcaagggatttccctcgcacctttaaacatggaagacatgagacatgcaaaga |
217 |
Q |
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| T |
27404137 |
gaaatcgcagaagatgcttctgatactatagaagaacatatcgatgatcaagggatttcccttgcgcctttaaacatggaagacatgagacatgcaaaga |
27404236 |
T |
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| Q |
218 |
ataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatggcttgtttattacgggcataagaacttctgaacttgtatgggacccac |
317 |
Q |
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| T |
27404237 |
ataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatgacttgtttattacgggcataagaacttctgaacttgtatgggacccac |
27404336 |
T |
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| Q |
318 |
ccaccatctccctacaatgttttagcttacttcaataagctcttcaacacagtttgtgaaaacttatagcttatatgacatttggtagcaatagttagca |
417 |
Q |
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| T |
27404337 |
ccaccatctccctacaatgttttagcttacttctataagctcttcaacacagtttgtgaaaacttatagcttatatgacatttggtagcaatagttagca |
27404436 |
T |
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| Q |
418 |
cttaagagcaatcaaacattcacctttg |
445 |
Q |
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| T |
27404437 |
ctaatgagcaatcaaacattcacctttg |
27404464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 44936319 - 44936476
Alignment:
| Q |
67 |
ctaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaatttaaaatcagaaaagacgcttccgatgctatagaagaacatatcgatgatc |
166 |
Q |
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||||||||| |||| |||||| || |||||||||| ||| | ||||| || ||||| | |||| |||||| ||||| |||||| ||| || |||| |
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| T |
44936319 |
ctaagtaattaccatttattttagacaaagaagaaaaaggtgacagaagttgaaatcttagaagaagcttccattgctaccgaagaagataaagaagatc |
44936418 |
T |
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| Q |
167 |
aagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
224 |
Q |
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||| |||| ||||| |||||||||||||| ||||||||| | |||||||||||||| |
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| T |
44936419 |
aagtgattgccctcaggcctttaaacatggaggacatgagagaggcaaagaataaggt |
44936476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 45989794 - 45989855
Alignment:
| Q |
163 |
gatcaagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
224 |
Q |
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| T |
45989794 |
gatcaagtgatttccctccggcctttgaacatggaagacatgagacaggcaaagaataaggt |
45989855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 44927911 - 44927948
Alignment:
| Q |
77 |
accacttatttcaggaaaagaagaaagaggaggcagaa |
114 |
Q |
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| T |
44927911 |
accacttatttcagaaaaagaagaaaaaggaggcagaa |
44927948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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