View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_high_20 (Length: 231)
Name: NF18765_high_20
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 5446917 - 5446724
Alignment:
| Q |
16 |
actcaaatatagcttaacctctcacgagcctatgacaaatacatttttgaaaagtagctccaagtacaaagacaacctgcctaaccaatcttcatcagct |
115 |
Q |
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| T |
5446917 |
actcaaatatagcttaacctctcacgagcctatgacaaatacaattttgaaaagtagctccaagtacaaaggcaacctgcctaaccaatcttcatcagcc |
5446818 |
T |
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| Q |
116 |
gttagagtaaaaccttgcacaagtggcggcactaaaatagatgttaaggtagttcaaagtaaatcgcagaaaaaggtaatatttgctgaagcca |
209 |
Q |
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| T |
5446817 |
gaaggagtaaaaccttgcgcaagtggtggcactaaaatggatgttaaggtagttcgaagtatatctcagaaaaagataatctttgtagaagcca |
5446724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 5436283 - 5436122
Alignment:
| Q |
28 |
cttaacctctcacgagcctatgacaaatacatttttgaaaagtagctccaagtacaaagacaacctgcctaaccaatcttcatcagctgttagagtaaaa |
127 |
Q |
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| T |
5436283 |
cttaacctctcatgagcctttgacaaatacattttttgcaagtagctccaagaacaaagacaaccgacctaaccaacttgcatcagcagttagagcaatg |
5436184 |
T |
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| Q |
128 |
ccttgcacaagtggcggcactaaaatagatgttaaggtagttcaaagtaaatcgcagaaaaa |
189 |
Q |
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| T |
5436183 |
ccttgcaccagtgacatcaggaaaatcgatgttaaagtaattcaaagtaaatctcagaaaaa |
5436122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 5996747 - 5996565
Alignment:
| Q |
28 |
cttaacctctcacgagcctatgacaaatacatttttgaaaagtagctccaagtacaaagacaacctgcctaaccaatcttcatcagctgttagagtaaaa |
127 |
Q |
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| T |
5996747 |
cttaacctctcatgagcctctgacaaatacaattttgaaaagcagctccaagaacaaagacaacccgcccaaccagtttgcatcagcagtcaaagtaaaa |
5996648 |
T |
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| Q |
128 |
ccttgcacaagtggcggcactaaaatagatgttaaggtagttcaaagtaaatcgcagaaaaaggtaatatttgctgaagccagtgg |
213 |
Q |
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| T |
5996647 |
acttgcac---ccgcgacattaaaatggacgttaagctagtgcgaagtaaatctcagaaaaagataatctgtgcagaagccagtgg |
5996565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 5631678 - 5631725
Alignment:
| Q |
28 |
cttaacctctcacgagcctatgacaaatacatttttgaaaagtagctc |
75 |
Q |
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| T |
5631678 |
cttaacctctcatgagcctctgacaaatacaattttgaaaagtagctc |
5631725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 5994021 - 5993863
Alignment:
| Q |
28 |
cttaacctctcacgagcctatgacaaatacatttttgaaaagtagctccaagtacaaagacaacctgcctaaccaatcttcatcagctgttagagtaaaa |
127 |
Q |
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| T |
5994021 |
cttaacctctcacgagcctttaacaaatacaattctgcaaagaaactccgagaacaaagacaacccaccaaaccagtttgcatcagcagtcagagtaaag |
5993922 |
T |
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| Q |
128 |
cc-ttgcacaagtggcggcactaaaatagatgttaaggtagttcaaagtaaatcgcagaaaa |
188 |
Q |
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|| |||||| ||| | || | |||| || |||||| |||| | ||||||||||||||||| |
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| T |
5993921 |
ccgttgcacgagt---gacattgaaatggaagttaagctagtgcgaagtaaatcgcagaaaa |
5993863 |
T |
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