View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_high_5 (Length: 446)
Name: NF18765_high_5
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 446
Target Start/End: Complemental strand, 40180113 - 40179672
Alignment:
| Q |
5 |
gagtgagaagaattagaaaagttgcaaaactgagttgatttcatttacctggatcgtagttcccttggaaaaatgggtgtggcggtctctctgcttatca |
104 |
Q |
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| T |
40180113 |
gagtgacaagaattagaaaagttgcaaaactgagttgatttcatttacctggatcatagttcccttggaaaaatgggtgtggcggtctctctgcttatca |
40180014 |
T |
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| Q |
105 |
gtgcaaagcaacaagaaaataattgatcaataagaaaaaagtaaacgataatctatatgtccttaaggaatcacaaccatattgatttgatatgaatgca |
204 |
Q |
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| T |
40180013 |
gtgcaaagcaacaagaaaataattgatcaataagaaaaaagtaaacgataatctatatgtccttaaggaatcacaaccatattgatttgatatgaatgca |
40179914 |
T |
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| Q |
205 |
cataaaactactcaaactaatgtcttcagctcttcttttttggattttaatgatttgtatttagagtgaaataaaaagacatacttgtaacaagacaatg |
304 |
Q |
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| T |
40179913 |
cataaaactactcaaactaatgtcttcagctcttcttttttggattttaatgatttgtatttagagtgaaataaaaagacatacttgtaacaagacaatg |
40179814 |
T |
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| Q |
305 |
atcatttttgagcaatagtacaatcaaattgattgaaatataattacgaaactgaaaatgaacattaagatgaaatgaaaaaatgttacctgcagaacca |
404 |
Q |
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| T |
40179813 |
atcatttttgagcaatagtacaatcaaattgactgaaatataattacgaaactgaaaatgaacattaagatgaaatgaaaaaatgttacctgcagaacca |
40179714 |
T |
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| Q |
405 |
ggcagtgtgattggtggaggaggtgtcactttgagcccccct |
446 |
Q |
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| T |
40179713 |
ggcagtgtgattggtggaggaggtgtcactttgagcccccct |
40179672 |
T |
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