View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18765_low_11 (Length: 381)

Name: NF18765_low_11
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18765_low_11
NF18765_low_11
[»] chr6 (19 HSPs)
chr6 (53-371)||(1780571-1780889)
chr6 (202-371)||(29486475-29486642)
chr6 (206-300)||(24428827-24428919)
chr6 (253-365)||(22956378-22956490)
chr6 (253-365)||(23831902-23832014)
chr6 (202-281)||(29363531-29363609)
chr6 (261-366)||(21216466-21216571)
chr6 (238-381)||(31216207-31216346)
chr6 (79-207)||(33224522-33224650)
chr6 (76-207)||(29486224-29486355)
chr6 (79-178)||(904253-904352)
chr6 (203-347)||(903975-904115)
chr6 (202-281)||(34729857-34729935)
chr6 (77-207)||(22956637-22956766)
chr6 (77-207)||(23831626-23831755)
chr6 (130-200)||(24428622-24428692)
chr6 (147-207)||(8560093-8560153)
chr6 (78-116)||(27673842-27673880)
chr6 (235-310)||(8559901-8559972)
[»] chr3 (21 HSPs)
chr3 (53-371)||(40763664-40763982)
chr3 (54-371)||(20843116-20843432)
chr3 (53-370)||(3458006-3458324)
chr3 (253-365)||(52403212-52403324)
chr3 (78-207)||(16152063-16152191)
chr3 (202-321)||(17652934-17653051)
chr3 (253-365)||(11906529-11906641)
chr3 (79-207)||(19795412-19795540)
chr3 (207-329)||(16152317-16152437)
chr3 (202-371)||(29648421-29648590)
chr3 (203-362)||(35106430-35106584)
chr3 (202-267)||(21296014-21296078)
chr3 (236-366)||(38171470-38171603)
chr3 (202-267)||(46823886-46823950)
chr3 (137-183)||(11033972-11034018)
chr3 (144-198)||(29123428-29123482)
chr3 (123-207)||(35061864-35061948)
chr3 (266-309)||(36312281-36312324)
chr3 (77-197)||(52403473-52403595)
chr3 (235-310)||(19795661-19795732)
chr3 (229-309)||(37175495-37175573)
[»] chr7 (29 HSPs)
chr7 (54-371)||(13465310-13465627)
chr7 (54-371)||(28491167-28491484)
chr7 (54-297)||(25439566-25439806)
chr7 (202-371)||(34659394-34659561)
chr7 (202-349)||(29715764-29715909)
chr7 (202-301)||(37202823-37202921)
chr7 (253-365)||(25592182-25592294)
chr7 (76-206)||(37202571-37202700)
chr7 (202-329)||(758911-759036)
chr7 (202-281)||(46211663-46211741)
chr7 (268-381)||(14047081-14047196)
chr7 (268-381)||(14357111-14357226)
chr7 (202-321)||(48609052-48609169)
chr7 (79-207)||(45855342-45855470)
chr7 (144-198)||(27097050-27097104)
chr7 (144-198)||(27181199-27181253)
chr7 (138-184)||(29716051-29716097)
chr7 (53-207)||(40253844-40253998)
chr7 (326-371)||(25439521-25439566)
chr7 (90-207)||(25591918-25592035)
chr7 (137-200)||(34658929-34658992)
chr7 (229-365)||(37049134-37049269)
chr7 (224-281)||(83617-83673)
chr7 (202-267)||(39719961-39720025)
chr7 (261-309)||(20926818-20926866)
chr7 (146-184)||(20927083-20927121)
chr7 (232-286)||(40253630-40253683)
chr7 (333-365)||(40253551-40253583)
chr7 (226-274)||(45228050-45228098)
[»] chr1 (33 HSPs)
chr1 (54-371)||(30950737-30951054)
chr1 (46-373)||(29798978-29799305)
chr1 (207-349)||(11142697-11142837)
chr1 (213-371)||(33240790-33240946)
chr1 (207-328)||(10406128-10406247)
chr1 (203-371)||(47367882-47368049)
chr1 (207-349)||(10177922-10178062)
chr1 (240-361)||(52110936-52111056)
chr1 (219-299)||(28403123-28403202)
chr1 (202-281)||(44961470-44961548)
chr1 (86-205)||(47367639-47367757)
chr1 (202-311)||(19313401-19313508)
chr1 (78-207)||(23614402-23614530)
chr1 (207-329)||(23614656-23614776)
chr1 (202-349)||(1600502-1600650)
chr1 (144-207)||(29357169-29357232)
chr1 (203-347)||(46515613-46515753)
chr1 (79-178)||(21972199-21972298)
chr1 (202-267)||(15757758-15757822)
chr1 (142-207)||(19313217-19313281)
chr1 (203-347)||(21972436-21972576)
chr1 (95-207)||(10989447-10989559)
chr1 (78-178)||(11142442-11142541)
chr1 (18-53)||(31032929-31032964)
chr1 (251-365)||(5184626-5184737)
chr1 (202-267)||(10620145-10620209)
chr1 (144-207)||(5184891-5184954)
chr1 (144-207)||(10177734-10177796)
chr1 (142-177)||(44960909-44960944)
chr1 (235-365)||(10989152-10989281)
chr1 (229-310)||(27696506-27696583)
chr1 (229-310)||(24134376-24134455)
chr1 (144-207)||(46515441-46515505)
[»] chr2 (18 HSPs)
chr2 (54-371)||(16546206-16546523)
chr2 (65-371)||(45655875-45656180)
chr2 (156-342)||(39070152-39070338)
chr2 (143-363)||(37614532-37614754)
chr2 (202-371)||(42799084-42799253)
chr2 (55-170)||(39070355-39070459)
chr2 (215-347)||(4435287-4435417)
chr2 (51-197)||(26180406-26180551)
chr2 (53-207)||(8230376-8230531)
chr2 (226-365)||(21746085-21746221)
chr2 (251-364)||(14802654-14802768)
chr2 (54-207)||(35524913-35525066)
chr2 (330-371)||(39069978-39070019)
chr2 (130-189)||(42799360-42799420)
chr2 (232-286)||(35524694-35524747)
chr2 (78-174)||(4435024-4435120)
chr2 (333-365)||(35524615-35524647)
chr2 (265-329)||(38881794-38881857)
[»] chr8 (26 HSPs)
chr8 (54-371)||(12491418-12491735)
chr8 (202-371)||(18881858-18882025)
chr8 (202-371)||(38172699-38172870)
chr8 (207-349)||(38699683-38699823)
chr8 (54-207)||(6115131-6115284)
chr8 (54-207)||(32415644-32415797)
chr8 (213-328)||(43115234-43115347)
chr8 (209-346)||(13541357-13541491)
chr8 (209-346)||(13682982-13683116)
chr8 (202-371)||(41570441-41570609)
chr8 (77-199)||(41570189-41570311)
chr8 (253-365)||(6114873-6114984)
chr8 (150-207)||(38172982-38173039)
chr8 (202-307)||(40118144-40118247)
chr8 (123-207)||(1233756-1233840)
chr8 (144-198)||(5808853-5808907)
chr8 (202-267)||(4072227-4072291)
chr8 (202-267)||(21441593-21441657)
chr8 (123-207)||(13641112-13641196)
chr8 (123-207)||(13741524-13741608)
chr8 (210-248)||(33613707-33613745)
chr8 (202-267)||(41323181-41323245)
chr8 (229-310)||(1233564-1233641)
chr8 (229-310)||(13640920-13640997)
chr8 (229-310)||(13741332-13741409)
chr8 (150-191)||(43115046-43115087)
[»] chr4 (24 HSPs)
chr4 (54-371)||(22785880-22786196)
chr4 (65-371)||(6016739-6017044)
chr4 (65-371)||(2407018-2407324)
chr4 (202-371)||(21790774-21790943)
chr4 (202-371)||(54165869-54166031)
chr4 (202-371)||(52628294-52628465)
chr4 (78-207)||(48861760-48861888)
chr4 (202-349)||(8745633-8745778)
chr4 (215-356)||(17815897-17816040)
chr4 (253-381)||(11950592-11950720)
chr4 (79-207)||(21790525-21790652)
chr4 (202-281)||(48841184-48841262)
chr4 (207-329)||(48862014-48862134)
chr4 (137-207)||(52628100-52628170)
chr4 (54-207)||(8762829-8762982)
chr4 (85-180)||(48840949-48841043)
chr4 (144-200)||(54166160-54166216)
chr4 (123-207)||(16608578-16608662)
chr4 (202-267)||(43892522-43892586)
chr4 (235-286)||(8762614-8762664)
chr4 (232-286)||(5476394-5476447)
chr4 (163-200)||(856894-856931)
chr4 (333-365)||(5476315-5476347)
chr4 (333-365)||(8762535-8762567)
[»] chr5 (20 HSPs)
chr5 (65-371)||(40528085-40528392)
chr5 (203-371)||(16908551-16908717)
chr5 (224-371)||(40360936-40361080)
chr5 (65-206)||(16908840-16908979)
chr5 (238-366)||(7008942-7009069)
chr5 (202-329)||(34034105-34034230)
chr5 (207-328)||(17695850-17695969)
chr5 (202-371)||(19948752-19948915)
chr5 (137-207)||(22098943-22099013)
chr5 (202-281)||(41640054-41640132)
chr5 (49-207)||(3498684-3498842)
chr5 (78-207)||(34033839-34033967)
chr5 (202-267)||(13517580-13517644)
chr5 (202-267)||(17768976-17769040)
chr5 (203-347)||(42353164-42353304)
chr5 (145-207)||(19949035-19949097)
chr5 (203-308)||(14521651-14521753)
chr5 (54-104)||(7008761-7008811)
chr5 (333-365)||(3498391-3498423)
chr5 (144-207)||(42352990-42353054)
[»] scaffold0186 (1 HSPs)
scaffold0186 (202-371)||(22726-22893)
[»] scaffold0361 (1 HSPs)
scaffold0361 (67-207)||(6917-7056)
[»] scaffold0002 (2 HSPs)
scaffold0002 (203-298)||(428333-428426)
scaffold0002 (144-207)||(428548-428611)
[»] scaffold0110 (1 HSPs)
scaffold0110 (145-207)||(7097-7159)
[»] scaffold0005 (1 HSPs)
scaffold0005 (202-348)||(292188-292332)
[»] scaffold0481 (2 HSPs)
scaffold0481 (202-275)||(6701-6773)
scaffold0481 (138-184)||(6516-6562)
[»] scaffold1554 (1 HSPs)
scaffold1554 (224-342)||(819-935)
[»] scaffold0271 (1 HSPs)
scaffold0271 (94-207)||(20141-20255)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 53 - 371
Target Start/End: Complemental strand, 1780889 - 1780571
Alignment:
Q  53 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 152  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1780889 gcaggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaatgagttggtgtaaattaatattcggctacccca 1780790  T
Q  153 aataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttt 252  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1780789 tataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttt 1780690  T
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780689 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 1780590  T
Q  353 tgtcaatttttatcctttg 371  Q
     ||||||||||||||||||    
T  1780589 cgtcaatttttatcctttg 1780571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 29486475 - 29486642
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||| | |||||||| |||| | |||| |||||||||||||||||||||||||||||    
T  29486475 cataaacaaattaattggacaat-agtttcttgcaaataacctattt-tcttacattgaaaaatatattaataatctatttagtaaacggtcaattatgg 29486572  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||||| |||  ||||||||||| ||||  |||||||||| |||||| |||||||||||||||||| ||||    
T  29486573 ataaatttgacttcttgaaatgtatttgccacaacttttctaaataactattgtcaatttttatcatttg 29486642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 24428827 - 24428919
Alignment:
Q  206 aacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatg 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| |||||    
T  24428827 aacaaattaaatggacattgagtttcttgaaaataacctatttg-ttaacattgaaaaagacattattaatctatttagt-aacggtcagttatg 24428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 365
Target Start/End: Complemental strand, 22956490 - 22956378
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    |||||||||||| | ||||||||||||||| |||||  |||| |||||||||||||||| |||||||||  |||||||   |||||||||||||||||||    
T  22956490 tacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaacttttttaaatagctat 22956391  T
Q  353 tgtcaatttttat 365  Q
     ||||||||||||    
T  22956390 cgtcaatttttat 22956378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 365
Target Start/End: Original strand, 23831902 - 23832014
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    |||||||||||| | ||||||||||||||| |||||  |||| |||||||||||||||| |||||||||  |||||||   |||||||||||||||||||    
T  23831902 tacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaacttttttaaatagctat 23832001  T
Q  353 tgtcaatttttat 365  Q
     ||||||||||||    
T  23832002 cgtcaatttttat 23832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 29363609 - 29363531
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  29363609 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagacattattaatctatt 29363531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 21216466 - 21216571
Alignment:
Q  261 aaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatt 360  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||||| | || |||||   |||||||   ||||||||||||||||||| |||||||    
T  21216466 aaaagacattattaatctattttgtaaatagtcatttatggataaaatttgctttttgaatcacattttatctaacttttttaaatagctatcgtcaatt 21216565  T
Q  361 tttatc 366  Q
    ||||||    
T  21216566 tttatc 21216571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 381
Target Start/End: Complemental strand, 31216346 - 31216207
Alignment:
Q  238 ataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaact 337  Q
    ||||||||||||| | ||||||||||| |   ||||||||||||| |||||  |||| |||||||||||||||| |||||||||  ||||||   |||||    
T  31216346 ataacctatttgtgt-acattggaaaata---tattaatctattttgtaaatagtcatttatggataaaattggcttcttgaaacacattttgtccaact 31216251  T
Q  338 tttttaaatagctattgtcaatttttatcctttgctactcctct 381  Q
     ||||||||||||||| |||| ||||||| |||| |||| ||||    
T  31216250 attttaaatagctattttcaagttttatcatttgttactgctct 31216207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 33224522 - 33224650
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    ||||||||| | |||||||||||| | | | || |||| |||  |||||| || ||| |||||  |||||||||||||||||| |||||||||||| |||    
T  33224522 ggggtagcccttgctaccccaaaataaaaaatattcttaaattggttggtatatatttatatttagctaccccaaataataaatattgagctaccctaaa 33224621  T
Q  179 caaattcagttgtcgaaaattaacataaa 207  Q
    ||| ||  |||||||||||||||||||||    
T  33224622 caagtttggttgtcgaaaattaacataaa 33224650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 29486224 - 29486355
Alignment:
Q  76 caaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccc 175  Q
    ||||||||||||||||||||||||||||||||| || |||| |||   ||||| |||| | ||||  ||||||| |||||||||||||| ||||||  ||    
T  29486224 caaggggtagccttggctaccccaaaaaatatactattcttcaattgtttggtataaaattatatctggctacctcaaataataaacatcgagctattcc 29486323  T
Q  176 aaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||| ||||| | ||||   |||||||||||||    
T  29486324 aaataaatttaattgtaagaaattaacataaa 29486355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 904352 - 904253
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    ||||||||||| |||||||||||||||| |||| |||| |||  |||| | |||| | | |||  |||||||||||||||||| ||||||||||||||||    
T  904352 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttagctaccccaaataataaatattgagctaccccaaa 904253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 347
Target Start/End: Complemental strand, 904115 - 903975
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    |||||||||||||| ||||| | ||||| ||| ||||||| | ||||||| |||||| ||||  ||||| |||| |||||| ||||||||||||||||||    
T  904115 ataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgttt-acattgaaaaa--cattaataatttatttattaaacggtcaattatgga 904020  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaata 347  Q
    |||||||   ||||| |||| |||||| | ||  |||||||||||    
T  904019 taaaatttacttcttaaaatacattttgcccacattttttaaata 903975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 34729857 - 34729935
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||| ||||||| ||| |||||||||||||||||||||||||  || |||||  |||||||||||||||||||||    
T  34729857 catagacaagttaaatgtacaatgagtttcttgcaaataacctattt-attaacatttaaaaagacattattaatctatt 34729935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 22956766 - 22956637
Alignment:
Q  77 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 176  Q
    ||||||||| ||||||||||| ||||||   |||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| ||||||||||||||    
T  22956766 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 22956667  T
Q  177 aacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||| || ||||| | |||| |||||||||    
T  22956666 aacaagtttagttg-ccaaaaataacataaa 22956637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 23831626 - 23831755
Alignment:
Q  77 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 176  Q
    ||||||||| ||||||||||| ||||||   |||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| ||||||||||||||    
T  23831626 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 23831725  T
Q  177 aacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||| || ||||| | |||| |||||||||    
T  23831726 aacaagtttagttg-ccaaaaataacataaa 23831755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 24428622 - 24428692
Alignment:
Q  130 taaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaatta 200  Q
    |||||| |||| ||| ||||| ||||||||||||||||  ||||| ||||||||||||||| |||||||||    
T  24428622 taaatttatatccggttaccctaaataataaacattgaattaccctaaacaaattcagttgccgaaaatta 24428692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 8560153 - 8560093
Alignment:
Q  147 accccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||||||||||||| |||||||||||||||| || ||  |||| ||||||||||||||||    
T  8560153 accccaaataataaatattgagctaccccaaataagtttggttgccgaaaattaacataaa 8560093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 27673842 - 27673880
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctt 116  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  27673842 aggggtagccttggctaccccaaaaaaaatattattctt 27673880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 8559972 - 8559901
Alignment:
Q  235 caaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  8559972 caaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 8559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 53 - 371
Target Start/End: Original strand, 40763664 - 40763982
Alignment:
Q  53 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 152  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763664 gcaggggcgcaacccttcattgacaagaggtagccttggttaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 40763763  T
Q  153 aataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttt 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763764 aataataaacattgagctatcccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttt 40763863  T
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763864 tacattggaaaaaacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 40763963  T
Q  353 tgtcaatttttatcctttg 371  Q
    |||||||||||||||||||    
T  40763964 tgtcaatttttatcctttg 40763982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 54 - 371
Target Start/End: Complemental strand, 20843432 - 20843116
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| || ||||||||||||||    
T  20843432 caggggcgtagccctttattggcaaggggtagccttggctaccccaaaaaatatattaatatttaattggttggtataaatttattttcggctaccccaa 20843333  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  20843332 ataataaacattgagctaccccaaacaaattcagttgtcgaaagctagcataaacaatttaaatggacattgaatttcttgcaaataacctatttg-ttt 20843234  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20843233 acattggaaaagacattattaatctatttagtaaatggtctattatggataaaattggcttcttgaaatgcattttacccaacttttttaaatagctatt 20843134  T
Q  354 gtcaatttttatcctttg 371  Q
    || |||| ||||||||||    
T  20843133 gttaattcttatcctttg 20843116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 53 - 370
Target Start/End: Complemental strand, 3458324 - 3458006
Alignment:
Q  53 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 152  Q
    ||||||||| | |||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||   ||||| |||||| ||||||||||||||||    
T  3458324 gcaggggcgtagcccttcattggcaacaggtagccttggctacccaaaaaaatatattaatctttaattgtttggtctaaatttatattcggctacccca 3458225  T
Q  153 aataataaacattgagcta--ccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgt 250  Q
     |||||||| |||||| ||  ||||||  ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  3458224 tataataaatattgagatataccccaagtaaattcagttgccgaaaattagcataaacaaattaaatggatattgagtttcttgcaaataacttatttgt 3458125  T
Q  251 tttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagct 350  Q
    || ||| |||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||  ||||||| |||| |||||||||||      
T  3458124 tt-acactggagaagacattattaatttatctagtaaacggtcaattatagataaaattggtttcttgaaatttattttacccaacctttttaaatagtc 3458026  T
Q  351 attgtcaatttttatccttt 370  Q
     |||||||||||||||||||    
T  3458025 gttgtcaatttttatccttt 3458006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 365
Target Start/End: Complemental strand, 52403324 - 52403212
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    |||||||||||| | ||||||||||||||| |||||  |||| |||||||||||||||| |||||||||  |||||||  ||||||||||||||||||||    
T  52403324 tacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaacttttttaaatagctat 52403225  T
Q  353 tgtcaatttttat 365  Q
     ||||||||||||    
T  52403224 cgtcaatttttat 52403212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 16152063 - 16152191
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 177  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| |||| ||||||||||||||||||||||||||||||||||||    
T  16152063 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccccaaataataaacattgagctaccccaa 16152162  T
Q  178 acaaattcagttgtcgaaaattaacataaa 207  Q
    | || || ||||| | ||||||| ||||||    
T  16152163 ataagtttagttg-caaaaattagcataaa 16152191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 17653051 - 17652934
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  || ||||| |||||||||||||||||||| ||| |||||   ||||||| |    
T  17653051 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-attaacatttgaaaagacattattaatcta-ttattaaacaaacaattattg 17652954  T
Q  302 ataaaattggtttcttgaaa 321  Q
    || ||||||| |||||||||    
T  17652953 atgaaattgggttcttgaaa 17652934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 365
Target Start/End: Complemental strand, 11906641 - 11906529
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    ||||||| |||| | ||||||||||||||| |||||  |||| ||||| ||||||||||  ||||||||  ||||| |  ||||||||||||||||||||    
T  11906641 tacattgaaaaatatattattaatctattttgtaaattgtcatttatgaataaaattgggctcttgaaacacatttcatccaacttttttaaatagctat 11906542  T
Q  353 tgtcaatttttat 365  Q
     ||||||||||||    
T  11906541 cgtcaatttttat 11906529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 19795412 - 19795540
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    ||||||||| | |||||||||||| | | | || |||| |||  |||||| || ||| |||||  ||||| |||||||||||| ||||||||||||||||    
T  19795412 ggggtagcccttgctaccccaaaataaaaaatattcttgaattggttggtatatatttatatttagctactccaaataataaatattgagctaccccaaa 19795511  T
Q  179 caaattcagttgtcgaaaattaacataaa 207  Q
    ||| ||  |||||||||||||||||||||    
T  19795512 caagtttggttgtcgaaaattaacataaa 19795540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 16152317 - 16152437
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||||||||  |||| ||||||||||||||||||| |||||  ||||||||  ||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  16152317 acaaattaaacagacaatgagtttcttgcaaataacatattt-atttacatttaaaaagtcattattaatcta-ttattaaacagacaattattgatgaa 16152414  T
Q  307 attggtttcttgaaatgcatttt 329  Q
    ||||| ||||| |||||||||||    
T  16152415 attgggttcttcaaatgcatttt 16152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 29648421 - 29648590
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtca--attat 299  Q
    ||||| ||||||||| ||||| |  |||| |||||||| |  | ||||||| | |||| |||||| ||||||||| ||||||||||||  |||  |||||    
T  29648421 cataatcaaattaaacggacaataggtttattgcaaatgatttctttgttt-atattgaaaaagagattattaatttatttagtaaacaatcaatattat 29648519  T
Q  300 ggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||||||||  ||||| |||| |||||| | |||||||| | |||| ||||||||||||||||| |||||    
T  29648520 ggataaaattgacttcttaaaatccattttgctcaacttttct-aataactattgtcaatttttattctttg 29648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 362
Target Start/End: Complemental strand, 35106584 - 35106430
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    |||||||||||||| ||||| | ||||| ||| |||| |||| ||| ||| |||||| ||||  ||||| ||||||||||| ||||| ||||||||||||    
T  35106584 ataaacaaattaaaaggacaataagttt-ttgaaaattacctgtttcttt-acattgaaaaa--cattaataatctatttattaaacagtcaattatgga 35106489  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttt 362  Q
    ||||||||  ||||| ||||   |||| | ||| ||||||||||| || |||||||||||    
T  35106488 taaaattgacttcttaaaatatgttttgcccaaattttttaaata-cttttgtcaatttt 35106430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 21296014 - 21296078
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  21296014 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 21296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 38171470 - 38171603
Alignment:
Q  236 aaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaa----ttatggataaaattggtttcttgaaatgcattttac 331  Q
    ||||||||||||||| | | ||| ||||||||||||||||||||||| ||||||  ||||    |||||||||||||||  || || |||  ||||||      
T  38171470 aaataacctatttgtgtaa-attagaaaagacattattaatctattttgtaaacaatcaatcatttatggataaaattgactttttaaaacacattttgt 38171568  T
Q  332 acaacttttttaaatagctattgtcaatttttatc 366  Q
     |||||||||| |||||||||| | ||||||||||    
T  38171569 tcaacttttttgaatagctatttttaatttttatc 38171603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 46823886 - 46823950
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  46823886 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 46823950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 11034018 - 11033972
Alignment:
Q  137 atattcggctaccccaaataataaacattgagctaccccaaacaaat 183  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||    
T  11034018 atatccggttacctcaaataataaacattgagctaccccaaacaaat 11033972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 29123428 - 29123482
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaat 198  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||    
T  29123428 gctaccccaaataataaatattgagctatcccaaataaatttcgttgtcgaaaat 29123482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 35061864 - 35061948
Alignment:
Q  123 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| || ||| |||||  |||||| ||||||||||| |||||||||| | ||| || ||  |||||||||||||||||||||    
T  35061864 gttggtatatatttatatttagctacctcaaataataaatattgagctactctaaataagtttggttgtcgaaaattaacataaa 35061948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 36312324 - 36312281
Alignment:
Q  266 acattattaatctatttagtaaacggtcaattatggataaaatt 309  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||    
T  36312324 acattaataatctatttattaaacagtcaattatggataaaatt 36312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 52403595 - 52403473
Alignment:
Q  77 aaggggtagccttggctaccccaaaaaat--atattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccc 174  Q
    ||||||||||||| ||||||| ||||||   |||||| ||||  || ||||||| |  ||  |||| | ||||||| ||||||||||||||||| |||||    
T  52403595 aaggggtagccttagctacccaaaaaaaataatattattcttgtattagttggtatgtatctatatccagctaccctaaataataaacattgagataccc 52403496  T
Q  175 caaacaaattcagttgtcgaaaa 197  Q
     ||| || |||||||||| ||||    
T  52403495 taaataagttcagttgtcaaaaa 52403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 19795661 - 19795732
Alignment:
Q  235 caaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  19795661 caaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 19795732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 37175495 - 37175573
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaatt 309  Q
    ||||||||||||| |||||| ||| |||||  ||||||||||| ||||||||||| ||| |  | ||||||||||||||||    
T  37175495 ttcttgcaaataatctatttattt-acatta-aaaagacattaataatctatttattaatcatttaattatggataaaatt 37175573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 54 - 371
Target Start/End: Original strand, 13465310 - 13465627
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465310 caggggtgcaacccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 13465409  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    ||||| ||||||||||||||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465410 ataattaacattgagctaccctaaacaaattcagtttccgaaatttaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 13465509  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465510 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 13465609  T
Q  354 gtcaatttttatcctttg 371  Q
    ||||||||||||||||||    
T  13465610 gtcaatttttatcctttg 13465627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 54 - 371
Target Start/End: Original strand, 28491167 - 28491484
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28491167 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattgatactcggctaccccaa 28491266  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28491267 ataataaacattgagctatcccaaacaaattcagttgccgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttatttt 28491366  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28491367 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaaattttttaaatagctatt 28491466  T
Q  354 gtcaatttttatcctttg 371  Q
    ||||||||||||||||||    
T  28491467 gtcaatttttatcctttg 28491484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 54 - 297
Target Start/End: Complemental strand, 25439806 - 25439566
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25439806 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 25439707  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  25439706 ataataaatattgagctaccccgaacaaattcagttgccgaaaattaacataaacaaattaaatggacattgagtttcttgca---aacctatttgtttt 25439610  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25439609 acattggaaaagacattattaatctatttagtaaacggtcaatt 25439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 34659394 - 34659561
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    ||||||||||||||||||| | ||||||| ||||||||||| |||| |||| |||||  |||| ||||||||||||||||||||||||  |||||||| |    
T  34659394 cataaacaaattaaatggataatgagtttattgcaaataacttattagttt-acatttaaaaatacattattaatctatttagtaaacactcaattatag 34659492  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||||||||||||||||||||||||||||   ||| |||| | |||||| ||||| ||||||| |||||||    
T  34659493 ataaaattggtttcttgaaatgcattttgtccaaattttct-aatagccattgtaaatttttgtcctttg 34659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 29715909 - 29715764
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||||||  ||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| ||| ||||| ||| ||||| |    
T  29715909 catagacaaattaaatggacggtgagtttcttgtaaataacctattt-atttacatttgaaaagacattattaatcta-ttattaaacagtctattattg 29715812  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    || ||||||| ||||||||| ||||||| | |||| ||| ||||||||    
T  29715811 atgaaattgggttcttgaaacgcattttgcccaacgtttctaaatagc 29715764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 37202823 - 37202921
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||  ||||| |||||||||||||||||||||||||| ||| |||||    
T  37202823 cataaacaaattaaatggacattcagtttcttgcaaataatctatttg-tttacatcagaaaaaacattattaatctatttagtaaacggccaactatgg 37202921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 365
Target Start/End: Original strand, 25592182 - 25592294
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    ||||||| |||| | ||||||||||||||| |||||  |||| |||||||||||||||| |||||||||  |||||||  ||||||||||||||||||||    
T  25592182 tacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaacttttttaaatagctat 25592281  T
Q  353 tgtcaatttttat 365  Q
     ||||||||||||    
T  25592282 cgtcaatttttat 25592294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 37202571 - 37202700
Alignment:
Q  76 caaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccc 175  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||  |||||| || ||| |||| | ||| |||||||||||||| ||| ||| | | |    
T  37202571 caaggggtagccttggctaccc-aaaaaatatattattcttcaattggttggtatatatttatatcctgctgccccaaataataaatattaagccatctc 37202669  T
Q  176 aaacaaattcagttgtcgaaaattaacataa 206  Q
    ||||||||| |||||||||||||||||||||    
T  37202670 aaacaaatttagttgtcgaaaattaacataa 37202700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 758911 - 759036
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||| ||| |||||||||||||||||| ||||||  |||||||| |||||||||||||||||||| ||| |||||   ||||||| |    
T  758911 catagacaaattaaatgtacaatgagtttcttgcaaataatctattt-atttacatttgaaaagacattattaatcta-ttattaaacaaacaattattg 759008  T
Q  302 ataaaattggtttcttgaaatgcatttt 329  Q
    || ||||| | ||||||||||| |||||    
T  759009 atgaaattcggttcttgaaatgtatttt 759036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 46211741 - 46211663
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  46211741 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagacattattaatctatt 46211663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 14047081 - 14047196
Alignment:
Q  268 attattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaac--ttttttaaatagctattgtcaatttttat 365  Q
    ||||||||||||||| |||||  |||| |||||| |||||||||||||||||||  ||||||   ||||  |||||||||||| || |||||||||||||    
T  14047081 attattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaacttttttttaaatagttactgtcaatttttat 14047180  T
Q  366 cctttgctactcctct 381  Q
    | ||||||||| ||||    
T  14047181 catttgctactgctct 14047196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 14357111 - 14357226
Alignment:
Q  268 attattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaac--ttttttaaatagctattgtcaatttttat 365  Q
    ||||||||||||||| |||||  |||| |||||| |||||||||||||||||||  ||||||   ||||  |||||||||||| || |||||||||||||    
T  14357111 attattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaacttttttttaaatagttactgtcaatttttat 14357210  T
Q  366 cctttgctactcctct 381  Q
    | ||||||||| ||||    
T  14357211 catttgctactgctct 14357226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 48609169 - 48609052
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  || ||||| ||||| |||||||||||||| ||| |||||   ||||||| |    
T  48609169 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-attaacatttgaaaacacattattaatcta-ttattaaacaaacaattattg 48609072  T
Q  302 ataaaattggtttcttgaaa 321  Q
    || ||||||| |||||||||    
T  48609071 atgaaattgggttcttgaaa 48609052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 45855342 - 45855470
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    ||||||||| | |||||||||||| | | | || |||| |||  || ||| || ||| |||||  |||||||||||||||||| ||||||||||||||||    
T  45855342 ggggtagcccttgctaccccaaaagaaaaaatattcttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 45855441  T
Q  179 caaattcagttgtcgaaaattaacataaa 207  Q
     || ||  |||||||||||||||||||||    
T  45855442 taagtttggttgtcgaaaattaacataaa 45855470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 27097050 - 27097104
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaat 198  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  27097050 gctaccccaaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 27181253 - 27181199
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaat 198  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  27181253 gctaccccaaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 29716097 - 29716051
Alignment:
Q  138 tattcggctaccccaaataataaacattgagctaccccaaacaaatt 184  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  29716097 tattcggctaccccaaataataaatattgagctaccccaaacaaatt 29716051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 40253998 - 40253844
Alignment:
Q  53 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 152  Q
    |||||||||  ||||||||||  || | ||||||| |||||||||||||||| |||||  |||| |||| |||||| |   || |||||  |||| ||||    
T  40253998 gcaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaaatattgttcttgaatatgttggtatgtttttatatttagctatccca 40253899  T
Q  153 aataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||| ||| ||| |||||||||||| ||||| | ||||  ||||||||||||||    
T  40253898 aataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaa 40253844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 25439566 - 25439521
Alignment:
Q  326 ttttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  25439566 ttttacacaacttttttaaatagctattgttaatttttatcctttg 25439521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 25591918 - 25592035
Alignment:
Q  90 ggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagtt 189  Q
    ||||||||||||||| |||||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| |||||||||| |||||||| |||||||    
T  25591918 ggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccccaaataataaatattgagctactccaaacaagttcagtt 25592017  T
Q  190 gtcgaaaattaacataaa 207  Q
    | | ||||  ||||||||    
T  25592018 gccaaaaaacaacataaa 25592035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 34658929 - 34658992
Alignment:
Q  137 atattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaatta 200  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||    
T  34658929 atattccgctaccctaaataatatacattgagctactccaaacaagttcagttgttgaaaatta 34658992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 365
Target Start/End: Original strand, 37049134 - 37049269
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgca--t 326  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||| |||| ||||| || |||||   |||||||||| ||||| |||  ||  |    
T  37049134 ttcttacaaataacctatttgttt-acattg-aaaagacattattaatctttttattaaacagttaattacaaataaaattggcttctt-aaaaacatgt 37049230  T
Q  327 tttacacaacttttttaaatagctattgtcaatttttat 365  Q
    ||| | |||||||||||||||  | ||||||||||||||    
T  37049231 tttgcccaacttttttaaatatttgttgtcaatttttat 37049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 83673 - 83617
Alignment:
Q  224 tgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    ||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  83673 tgagtttcttgtaaataacctatttattt-acatttgaaaagacattattaatctatt 83617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 39719961 - 39720025
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  39719961 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 39720025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 20926866 - 20926818
Alignment:
Q  261 aaaagacattattaatctatttagtaaacggtcaattatggataaaatt 309  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||||||    
T  20926866 aaaaaacattaataatctatttattaaacagtcaattatggataaaatt 20926818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 20927121 - 20927083
Alignment:
Q  146 taccccaaataataaacattgagctaccccaaacaaatt 184  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  20927121 taccccaaataataaatattgagctaccccaaataaatt 20927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 40253683 - 40253630
Alignment:
Q  232 ttgcaaataacctatttgttttacattggaaaagacattattaatctatttagta 286  Q
    ||||||||||  ||||||||| |||||| |||||||||||||| |||||||||||    
T  40253683 ttgcaaataatttatttgttt-acattgaaaaagacattattagtctatttagta 40253630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 40253583 - 40253551
Alignment:
Q  333 caacttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||||| ||||||||||||||||    
T  40253583 caacttttttaaatagttattgtcaatttttat 40253551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 45228050 - 45228098
Alignment:
Q  226 agtttcttgcaaataacctatttgttttacattggaaaagacattatta 274  Q
    |||||||| |||||||| |||||  ||||||||| ||||||||||||||    
T  45228050 agtttcttacaaataacttattttgtttacattgaaaaagacattatta 45228098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 54 - 371
Target Start/End: Complemental strand, 30951054 - 30950737
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30951054 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcgagtaccccaa 30950955  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950954 ataataaacattgagcatccccaaacaaattcagttgccgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 30950855  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950854 acattgaaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 30950755  T
Q  354 gtcaatttttatcctttg 371  Q
    ||||||||||||||||||    
T  30950754 gtcaatttttatcctttg 30950737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 46 - 373
Target Start/End: Complemental strand, 29799305 - 29798978
Alignment:
Q  46 gttacaagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggc 145  Q
    |||| ||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||| |||||||||    
T  29799305 gttaaaagcaggggcgtagcccttcattggcaaggggtagccttggctaccc-aaaaaatatattaatctttaattggttggtataaatttatattcggc 29799207  T
Q  146 taccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataaccta 245  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||| | |||| || ||||||||||||||||||| |||||||||||| |||||||||||    
T  29799206 taccccaaataataaacattgagttactccaaataaattcagttgccaaaaactagcataaacaaattaaatggatattgagtttcttacaaataaccta 29799107  T
Q  246 tttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcatttta--cacaactttttta 343  Q
    |||| |||||||||| |||||||||||||||| |||||||||| | |||| ||| ||||||||||| ||||||||||||||||||  || ||     |||    
T  29799106 tttg-tttacattgggaaagacattattaatcaatttagtaaatgatcaaatatagataaaattggcttcttgaaatgcattttacccaaaaaaaaatta 29799008  T
Q  344 aatagctattgtcaatttttatcctttgct 373  Q
    ||||||||||||||||||||||||||||||    
T  29799007 aatagctattgtcaatttttatcctttgct 29798978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 349
Target Start/End: Original strand, 11142697 - 11142837
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    |||||||||||||||| |||||||||||| ||||||||| ||  |||||||| |||||||||||||||||||| ||| ||||| | ||||||| ||||||    
T  11142697 acaaattaaatggacaatgagtttcttgcgaataaccta-ttcatttacatttgaaaagacattattaatcta-ttattaaacagacaattattgataaa 11142794  T
Q  307 attggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  11142795 attgggttcttgaaacacattttacccaacgtttctaaatagc 11142837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 371
Target Start/End: Complemental strand, 33240946 - 33240790
Alignment:
Q  213 taaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggt 312  Q
    |||||||||||||| ||| ||| |||| ||||||| |||| ||||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagttt-acattggaaaatacattattaatctatttattaaacactcaattatggataaaattggt 33240848  T
Q  313 ttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    || || |||||||||||    || |||| | |||||| ||||||||||| |||||||||    
T  33240847 tttttaaaatgcattttgtctaaattttct-aatagccattgtcaatttctatcctttg 33240790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 10406247 - 10406128
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||||| |||||||||||||| ||| ||||| ||||||||| ||| ||    
T  10406247 acaaactaaatggacagtgagtttcttgcaaataacctattt-atttacattcgaaaaaacattattaatcta-ttattaaacagtcaattattgatgaa 10406150  T
Q  307 attggtttcttgaaatgcattt 328  Q
    ||||| ||||||||| ||||||    
T  10406149 attgggttcttgaaacgcattt 10406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 371
Target Start/End: Original strand, 47367882 - 47368049
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    ||||||| || ||| || || |||||||||||||||||  ||| |||||| |||||||| |||||||||| | | ||||| ||||||  |||| ||||||    
T  47367882 ataaacatatcaaacgggcaatgagtttcttgcaaatagtctaattgttt-acattggagaagacattatcattatattttgtaaacaatcaaatatgga 47367980  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||||||||  || ||||||  ||||||   |||||||||||||||| ||||||||||||||||| ||||    
T  47367981 taaaattgcctttttgaaacacattttgtccaacttttttaaatagatattgtcaatttttatcatttg 47368049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 349
Target Start/End: Original strand, 10177922 - 10178062
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||| |||||||||  |||||||||||||||||||||||||  || ||||| ||||| |||||||||||||| ||| ||||| ||||||||| ||| ||    
T  10177922 acaaactaaatggacggtgagtttcttgcaaataacctattt-attcacatttgaaaaaacattattaatcta-ttattaaacagtcaattattgatgaa 10178019  T
Q  307 attggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    ||||  ||||||||| ||||||| | | || ||||||||||||    
T  10178020 attgagttcttgaaacgcattttgcccgacgtttttaaatagc 10178062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 52111056 - 52110936
Alignment:
Q  240 aacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttt 339  Q
    ||||||||||||| | ||||||||||||||||||||| | |||||||||  |||||||||| |||||||||| ||||| ||| | |||||   |||||||    
T  52111056 aacctatttgttt-atattggaaaagacattattaatttgtttagtaaaaagtcaattatgaataaaattggcttcttaaaacgtattttgtccaacttt 52110958  T
Q  340 tttaaatagctattgtcaattt 361  Q
    |||||||| ||||||| |||||    
T  52110957 tttaaataactattgttaattt 52110936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 28403123 - 28403202
Alignment:
Q  219 gacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattat 299  Q
    |||| |||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgttt-acattgaaaaagacattattgatctatttaataaacggtcaattat 28403202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 44961470 - 44961548
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||    
T  44961470 catagacaaattaaatggacaatgagtttcttgcaaataacctattt-atttacatttgaaaagacatcattaatctatt 44961548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 47367639 - 47367757
Alignment:
Q  86 ccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattc 185  Q
    |||||||||||||||||||||| ||| | || ||| ||||||| |  ||| |||||  |||||| |||||||||||||||||||||||||||||| || |    
T  47367639 ccttggctaccccaaaaaatat-ttattgttgaattagttggtatgtatttatattttgctacctcaaataataaacattgagctaccccaaacatatcc 47367737  T
Q  186 agttgtcgaaaattaacata 205  Q
    | ||||||||||||| ||||    
T  47367738 aattgtcgaaaattagcata 47367757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 19313401 - 19313508
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| ||||||||||| || | ||||||||||||||||||| |||||  |||||||| |||||||||||||||||||| ||| ||||| ||||||||| |    
T  19313401 catagacaaattaaatagatagtgagtttcttgcaaataacttattt-atttacatttgaaaagacattattaatcta-ttattaaacagtcaattattg 19313498  T
Q  302 ataaaattgg 311  Q
    || |||||||    
T  19313499 atgaaattgg 19313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 23614402 - 23614530
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 177  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| |||| ||||||||| |||||||||||||||||||||| |||    
T  23614402 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccctaaataataaacattgagctacctcaa 23614501  T
Q  178 acaaattcagttgtcgaaaattaacataaa 207  Q
    | || || ||||| | ||||||| ||||||    
T  23614502 ataagtttagttg-caaaaattagcataaa 23614530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 23614656 - 23614776
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||||||||  |||| ||||||||||||||||||| |||||  ||||||||  ||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  23614656 acaaattaaacagacaatgagtttcttgcaaataacatattt-atttacatttaaaaagtcattattaatcta-ttattaaacagacaattattgatgaa 23614753  T
Q  307 attggtttcttgaaatgcatttt 329  Q
    ||||| ||||| |||||||||||    
T  23614754 attgggttcttcaaatgcatttt 23614776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 1600650 - 1600502
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaga---cattattaatctatttagtaaacggtcaatta 298  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||  |||||||| |||||||   ||| ||||||||| ||| ||||    ||||||    
T  1600650 catagacaaattaaatggacaatgagtttcttgcaaataacctattt-atttacatttgaaaagaaatcatcattaatcta-ttattaaataaacaatta 1600553  T
Q  299 tggataaaattggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    | ||| ||||||| ||| ||||| | ||||||| |||| ||| ||||||||    
T  1600552 ttgatgaaattgggttcctgaaacgtattttacccaacatttctaaatagc 1600502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 29357169 - 29357232
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||||||| |||||||||||||||| || || ||||| ||||||||||||||||    
T  29357169 gctaccccaaataataaatattgagctaccccaaataagtttagttgccgaaaattaacataaa 29357232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 46515613 - 46515753
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    |||||||||||||| ||||| | ||||| ||| ||||||| | ||||||| |||||| ||||  ||||| ||||||||||| ||||| |||||| |||||    
T  46515613 ataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgttt-acattgaaaaa--cattaataatctatttattaaacagtcaatcatgga 46515708  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaata 347  Q
    ||||||||  ||||| |||| | |||| | ||| |||||||||||    
T  46515709 taaaattgagttcttaaaatacgttttgcccaaattttttaaata 46515753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 21972199 - 21972298
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    ||||||||||| |||||||||||||||| |||| |||| |||  |||| | |||| | | |||   ||||||||||||||||| ||||||||||||||||    
T  21972199 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttaactaccccaaataataaatattgagctaccccaaa 21972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 15757758 - 15757822
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  15757758 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 15757822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 19313217 - 19313281
Alignment:
Q  142 cggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |||| | || |||||||||||    
T  19313217 cggctaccccaaataataaatattgagctaccccaaacacattccgttg-caaatattaacataaa 19313281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 21972436 - 21972576
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    |||||||||||||| ||||| | ||||| ||| ||||||| | |||| || |||||| ||||  ||||| ||||||||||| ||||| ||||||||||||    
T  21972436 ataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgctt-acattgaaaaa--cattaataatctatttattaaacagtcaattatgga 21972531  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaata 347  Q
    |||||||   ||||| |||| | |||| | ||| |||||||||||    
T  21972532 taaaatttacttcttaaaatacgttttgcccaaattttttaaata 21972576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 10989559 - 10989447
Alignment:
Q  95 ccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcga 194  Q
    ||||||||||  ||||| |||| |||| |||||| |   || |||||  |||||||||||||| ||| ||| |||||||||||||||||| | ||||  |    
T  10989559 ccccaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctaccccaaacaaatttatttgttaa 10989460  T
Q  195 aaattaacataaa 207  Q
    |||||||||||||    
T  10989459 aaattaacataaa 10989447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 11142442 - 11142541
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 177  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||   || ||| |  | | ||||||||||||| |||||||||||||||||||||| ||||    
T  11142442 aggggtagccttggctaccccaaaaaa-atattatacttaaagtggtcggtatgtacttatattcggctacctcaaataataaacattgagctactccaa 11142540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 31032964 - 31032929
Alignment:
Q  18 attaaggcataggtgtgggattgtgacagttacaag 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  31032964 attaaggcataggtgtgggattgtgacagttacaag 31032929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 5184737 - 5184626
Alignment:
Q  251 tttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagct 350  Q
    ||||||||| ||||||||||| ||||||||||| ||| | |||||||||| |||||||||  | ||| |||||| |||  | |||||||||||||||  |    
T  5184737 tttacattg-aaaagacattaataatctatttattaa-cagtcaattatgcataaaattgactccttaaaatgcgtttgcc-caacttttttaaatattt 5184641  T
Q  351 attgtcaatttttat 365  Q
     ||||||||||||||    
T  5184640 gttgtcaatttttat 5184626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 10620145 - 10620209
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| ||||||||||| |||||||||||||  |||||||| ||||||||    
T  10620145 catagacaaattaaatgtacaatgagtttcttgaaaataacctattt-atttacatttgaaaagac 10620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 5184954 - 5184891
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||||||| |||||| ||||| ||| || ||| |||||| ||||||| ||||||    
T  5184954 gctaccccaaataataaatattgagttaccctaaataagttcggttgtctaaaattagcataaa 5184891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 10177734 - 10177796
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||| |||||||||||| |||||||||||| ||| |||||| |||| | ||||||||||||||    
T  10177734 gctactccaaataataaatattgagctaccctaaataaattccgttg-caaaaattaacataaa 10177796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 44960909 - 44960944
Alignment:
Q  142 cggctaccccaaataataaacattgagctaccccaa 177  Q
    |||||||||||||||||||| |||||||||||||||    
T  44960909 cggctaccccaaataataaagattgagctaccccaa 44960944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 10989281 - 10989152
Alignment:
Q  235 caaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacaca 334  Q
    |||||||| ||||||||| |||||| |||||||||||||| | |||||||||  |  |||||| || | ||||||   || || |||||  ||   | ||    
T  10989281 caaataacttatttgttt-acattgaaaaagacattattagtatatttagtatgcaatcaattctgaagaaaattaactttttaaaatgtgttgagccca 10989183  T
Q  335 acttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||| ||||||||||||||||    
T  10989182 acttttttaaatagttattgtcaatttttat 10989152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 27696583 - 27696506
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    ||||| |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  27696583 ttcttacaaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 27696506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 24134376 - 24134455
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    |||||||||||||| ||||||||| |||||  |||| |||||| |||||| ||||  |||  ||||||||||||||||||||    
T  24134376 ttcttgcaaataacatatttgttt-acatttaaaaa-acattaataatctttttatcaaatagtcaattatggataaaattg 24134455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 46515441 - 46515505
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcag-ttgtcgaaaattaacataaa 207  Q
    ||||||| ||| |||||| |||||||||||||||| |||||  | ||||||||||||| ||||||    
T  46515441 gctaccctaaaaaataaatattgagctaccccaaataaatttggtttgtcgaaaattagcataaa 46515505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 54 - 371
Target Start/End: Original strand, 16546206 - 16546523
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  16546206 caggggcgcaactcttcattgacaagggttagccttggctaccccaaaaaatatattaaactttaataagttggtgtaaatttatattcggctaccccaa 16546305  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16546306 ataataaacattgagctaccctaaacaaattcagttgccgaaaattaacataaacaaattaaatggacattgagtttcttccaaataacctatttgtttt 16546405  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546406 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 16546505  T
Q  354 gtcaatttttatcctttg 371  Q
    ||||||||||||||||||    
T  16546506 gtcaatttttatcctttg 16546523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 65 - 371
Target Start/End: Complemental strand, 45656180 - 45655875
Alignment:
Q  65 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 164  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| || |||||||||||||||||||||| ||    
T  45656180 cccttcattggcaaggggtagccttggctaccccaaaaaatatattaatttttaattggttggtataaatttattttcggctaccccaaataataaatat 45656081  T
Q  165 tgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaa 264  Q
    ||||||||||||||||||||||||||||||||  || ||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||| ||||    
T  45656080 tgagctaccccaaacaaattcagttgtcgaaagctagcataaacaattgaaatggacattgaatttcttgcaaataacctatttg-tttacattgaaaaa 45655982  T
Q  265 gacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaattttta 364  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||| |||    
T  45655981 gacattattaatctatttagtaaacggtcaattatgaataaaattggctttttgaaatgcattttacccaacttttttaaatagctattgttaattctta 45655882  T
Q  365 tcctttg 371  Q
    |||||||    
T  45655881 tcctttg 45655875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 39070338 - 39070152
Alignment:
Q  156 aataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttac 255  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39070338 aataaacattgagataccctaaacaaattcagttgccgaaaattaacataaataaattaaatggacattgagtttcttgcaaataacctatttgttttac 39070239  T
Q  256 attggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaactttttt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39070238 attggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaactttttt 39070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 143 - 363
Target Start/End: Original strand, 37614532 - 37614754
Alignment:
Q  143 ggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataac 242  Q
    ||||||||||||||||||||||||||| ||||||| |||||| | | ||||||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  37614532 ggctaccccaaataataaacattgagccaccccaagcaaatttaatcgtcgaaaattagcataaacaaattaaatagacattgaatttcttgcaaataac 37614631  T
Q  243 ctatttgttt--tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaactttt 340  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||| ||||||||||||||||||| ||||||||    
T  37614632 ctatttgtttactacattggaaaagacattattaatctatttagtaaacggctaattatgaataaatttggcttcttgaaatgcattttacccaactttt 37614731  T
Q  341 ttaaatagctattgtcaattttt 363  Q
    || |||  ||||||||| |||||    
T  37614732 tttaatttctattgtcatttttt 37614754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 202 - 371
Target Start/End: Complemental strand, 42799253 - 42799084
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacgg-tcaattatg 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||    
T  42799253 cataaacaaattaaatggacattgagtttcttgcaaataaactatttgttt-acattggaaaagacattattaatctatttagtaaaatgatcaattatg 42799155  T
Q  301 gataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  42799154 gataaaattggcttcttgaaatgcattttatccaacttttttaaatagctattgtcaatttttatcatttg 42799084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 39070459 - 39070355
Alignment:
Q  55 aggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaa 154  Q
    ||||||||| |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  39070459 aggggcgcagcccttcattgacaaggggtag-----------ccaaaaaatatattaatctttaataagttggtgtaaatttatattcggctacctcaaa 39070371  T
Q  155 taataaacattgagct 170  Q
    ||||||||||||||||    
T  39070370 taataaacattgagct 39070355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 347
Target Start/End: Original strand, 4435287 - 4435417
Alignment:
Q  215 aatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggttt 314  Q
    |||||||| ||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| ||| ||||| | ||||||||||| ||||||  ||    
T  4435287 aatggacaatgagtttcttgtaaataacctatttattt-acatttgaaaagacattattaatcta-ttattaaacagacaattatggatgaaattgagtt 4435384  T
Q  315 cttgaaatgcattttacacaacttttttaaata 347  Q
    ||||||||||||||| | |||| ||| ||||||    
T  4435385 cttgaaatgcattttgcccaacgtttctaaata 4435417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 26180406 - 26180551
Alignment:
Q  51 aagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccc 150  Q
    ||||||||||| | ||||||||  |||||| ||||||||||||| |||||||||||||||||| || ||| ||||||| |  ||| ||||   |||||      
T  26180406 aagcaggggcgtagcccttcatatacaaggagtagccttggcta-cccaaaaaatatattaattttgaattagttggtatgtatttatatctagctactt 26180504  T
Q  151 caaataataaacattgagctaccccaaacaaattcagttgtcgaaaa 197  Q
    ||||||||||| ||||||||||| ||||||| || ||||||| ||||    
T  26180505 caaataataaatattgagctacctcaaacaagtttagttgtccaaaa 26180551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 8230531 - 8230376
Alignment:
Q  53 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaata-tattaatctttaataagttggtgtaaattaatattcggctacccc 151  Q
    |||||||||  ||||||||||  || | ||||||| |||||||||||||||| | ||||| |||| |||| |||||| |   || |||||  ||||||||    
T  8230531 gcaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctacccc 8230432  T
Q  152 aaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| ||| ||| |||||||||||||||||| | ||||  ||||||||||||||    
T  8230431 aaataaaaaatatttagctaccccaaacaaatttatttgttaaaaattaacataaa 8230376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 365
Target Start/End: Complemental strand, 21746221 - 21746085
Alignment:
Q  226 agtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgca 325  Q
    |||||| ||||| |||| ||||| ||| |||||| ||| |||||||||| ||||||||||| ||  ||||||| | ||||||||| ||| ||||||||      
T  21746221 agtttcatgcaagtaacttatttattt-acattgaaaatgacattattagtctatttagtatacaatcaattaagaataaaattgattttttgaaatg-- 21746125  T
Q  326 ttttacacaacttttttaaatagctattgtcaatttttat 365  Q
    || |   |||||||||||||||||| ||||||||||||||    
T  21746124 ttgtgtccaacttttttaaatagcttttgtcaatttttat 21746085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 14802768 - 14802654
Alignment:
Q  251 tttacattggaaaagacattattaatctattta-gtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    |||||||| ||||| |||||||||||||||||  ||||||  ||||||||  |||||||||| ||||||||| || ||||   |||||||| |||||||     
T  14802768 tttacattagaaaaaacattattaatctatttttgtaaacaatcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttctaaatagt 14802669  T
Q  350 tattgtcaattttta 364  Q
    | |||||||||||||    
T  14802668 tgttgtcaattttta 14802654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 35525066 - 35524913
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||  |||| |||| |||||| |   || |||||  ||||||||||    
T  35525066 caggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaattatttttcttgaatatgttggtatgtttttatatttagctaccccaa 35524967  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||| ||| ||| |||||||||||| ||||| | ||||  ||||||||||||||    
T  35524966 ataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaa 35524913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 39070019 - 39069978
Alignment:
Q  330 acacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  39070019 acacaacttttttaaatagctattgtcaatttttatactttg 39069978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 42799420 - 42799360
Alignment:
Q  130 taaattaatattcggctacccc-aaataataaacattgagctaccccaaacaaattcagtt 189  Q
    |||||| |||||| |||||||| |||||||||||||| |||||| ||||||||||||||||    
T  42799420 taaatttatattcagctacccccaaataataaacattcagctacaccaaacaaattcagtt 42799360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 35524747 - 35524694
Alignment:
Q  232 ttgcaaataacctatttgttttacattggaaaagacattattaatctatttagta 286  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| |||||||||||    
T  35524747 ttgcaaataacttatttgttt-acattgaaaaagacattattagtctatttagta 35524694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 4435024 - 4435120
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccc 174  Q
    ||||||||||  |||||||| ||||||||||||| |||| |||  || ||| |  ||| |||| ||| ||||  |||||||||||||||| ||||||    
T  4435024 aggggtagccaaggctacccaaaaaaatatattattcttgaattggtcggtatgtatttatatccggttaccttaaataataaacattgaactaccc 4435120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 35524647 - 35524615
Alignment:
Q  333 caacttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||||| ||||||||||||||||    
T  35524647 caacttttttaaatagttattgtcaatttttat 35524615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 38881794 - 38881857
Alignment:
Q  265 gacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcatttt 329  Q
    ||||||||||||||||| | ||||| | ||||||| ||| ||||||| ||||||||||| |||||    
T  38881794 gacattattaatctatt-attaaacagacaattatagatgaaattgggttcttgaaatgtatttt 38881857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 54 - 371
Target Start/End: Original strand, 12491418 - 12491735
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12491418 caggggcgcaacccttcattgacaaggggtagccttggctactccaaaaaatatattaatctttaataagttggtgcaaattaatattcggctaccccaa 12491517  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12491518 ataacaaacattgagctgccccaaacaaattcagttgccgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 12491617  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12491618 acattggaaaaaacattattaatctatttagtaaacggtcaattatggatacaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 12491717  T
Q  354 gtcaatttttatcctttg 371  Q
    ||||||||| ||||||||    
T  12491718 gtcaattttaatcctttg 12491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 18881858 - 18882025
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  18881858 cataaacatattaaatgggcaatgagtttcttgcaaataacctatttgttt-acattggaaaaaacattattaatctattttgtaaacaatcaattatgg 18881956  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||||||  |||||||||| ||||||   ||| |||| ||||||| ||||||||||||||||| ||||    
T  18881957 ataaaattgccttcttgaaat-cattttgtccaaattttctaaatagttattgtcaatttttatcatttg 18882025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 202 - 371
Target Start/End: Complemental strand, 38172870 - 38172699
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctat----ttagtaaacggtcaatt 297  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||| |||| |||||||| || |||||||||||||||    |||||||||  ||||||    
T  38172870 cataaacaaattaaatgaacaatgagtttattgcaaataacctattagttt-acattggagaatacattattaatctatatatttagtaaacactcaatt 38172772  T
Q  298 atggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||||||||||||||||| ||||||||||| ||   ||| |||| | ||||||||||||||||||||||||||||    
T  38172771 atggataaaattggttttttgaaatgcatcttgtccaaattttct-aatagctattgtcaatttttatcctttg 38172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 349
Target Start/End: Complemental strand, 38699823 - 38699683
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    |||||||||||||| | |||||||||||||||||||||||||  |||||||| |||||||||||||||||||| ||| ||||| ||| ||||| ||| ||    
T  38699823 acaaattaaatggagagtgagtttcttgcaaataacctattt-atttacatttgaaaagacattattaatcta-ttattaaacagtctattattgatgaa 38699726  T
Q  307 attggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    ||||| ||||||||| ||||||| | |||| ||| ||||||||    
T  38699725 attgggttcttgaaacgcattttgcccaacgtttctaaatagc 38699683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 6115284 - 6115131
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||| |||| ||||||   |||||||||||||||||||||||||||| |||||| ||||  || ||||||| |  ||  |||| | ||||||  ||    
T  6115284 caggggcgtatcctttcattaggaaggggtagccttggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccataa 6115185  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||| ||||||||||||| |||||||| | |||| |||||||||    
T  6115184 ataataaacattgaactaccccaaacaagttcagttgccaaaaaataacataaa 6115131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 207
Target Start/End: Original strand, 32415644 - 32415797
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||| | |||||||  ||||||||||| | |||||||||| ||||||||||||| |||| |||  |||||| |||| | ||||  ||| |||  ||    
T  32415644 caggggcgtagcccttcaacgacaaggggtaactttggctacccaaaaaaatatattattcttcaattggttggtataaacttatatctggcaaccttaa 32415743  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||||| |||||    
T  32415744 ataataaacattgagttaccccaaataaattaagttgtcaaaaattaatataaa 32415797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 43115234 - 43115347
Alignment:
Q  213 taaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggt 312  Q
    |||||||||| ||||||||||||||||||| |||||  |||||||| ||||| |||||||||||||| ||| ||||| ||||||||| ||| |||||||     
T  43115234 taaatggacagtgagtttcttgcaaataacatattt-atttacatttgaaaaaacattattaatcta-ttattaaacagtcaattattgatgaaattggg 43115331  T
Q  313 ttcttgaaatgcattt 328  Q
    ||||||||| ||||||    
T  43115332 ttcttgaaacgcattt 43115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 13541491 - 13541357
Alignment:
Q  209 aaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaat 308  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||  ||||| | ||||||  ||| ||||    
T  13541491 aaattaaatggacaatgagtttcttgcaaataacctattt-atttacatttgaaaagatattattaatctattt--taaacagacaattagtgatgaaat 13541395  T
Q  309 tggtttcttgaaatgcattttacacaacttttttaaat 346  Q
    ||  |||| |||| ||||||| | |||| |||||||||    
T  13541394 tgagttctcgaaacgcattttgcccaacgtttttaaat 13541357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 13682982 - 13683116
Alignment:
Q  209 aaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaat 308  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||  ||||| | ||||||  ||| ||||    
T  13682982 aaattaaatggacaatgagtttcttgcaaataacctattt-atttacatttgaaaagatattattaatctattt--taaacagacaattagtgatgaaat 13683078  T
Q  309 tggtttcttgaaatgcattttacacaacttttttaaat 346  Q
    ||  |||| |||| ||||||| | |||| |||||||||    
T  13683079 tgagttctcgaaacgcattttgcccaacgtttttaaat 13683116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 41570441 - 41570609
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||||| ||||||||   | ||||||||||||||||||||||||||||| || ||  |||| |||  |||||||||||| ||||||  ||||||||||    
T  41570441 cataaacatattaaatgagtaatgagtttcttgcaaataacctatttgttt-accttaaaaaa-acaacattaatctattttgtaaacaatcaattatgg 41570538  T
Q  302 at-aaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    || |||||||| ||||||||| ||||||    |||||||| ||||||||||| ||||||| ||||| ||||    
T  41570539 ataaaaattggcttcttgaaacgcatttagtccaacttttctaaatagctatggtcaattcttatcatttg 41570609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 41570189 - 41570311
Alignment:
Q  77 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 176  Q
    |||||||||||||||||||||||||||  |||||  |||| | |  || ||| |  ||| |||||| |||||||||||||||||| ||||||||||||||    
T  41570189 aaggggtagccttggctaccccaaaaacaatatttttcttgagttggtaggtatgtatttatattcagctaccccaaataataaatattgagctacccca 41570288  T
Q  177 aacaaattcagttgtcgaaaatt 199  Q
    || || |||||||| ||||||||    
T  41570289 aaaaagttcagttgccgaaaatt 41570311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 365
Target Start/End: Complemental strand, 6114984 - 6114873
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    |||||||||||| | |||||||||||||||  ||||  |||  |||||||||||||||| |||||||||  |||||||  || |||||||||||||||||    
T  6114984 tacattggaaaatatattattaatctattttataaatagtcctttatggataaaattgg-ttcttgaaacacattttatccagcttttttaaatagctat 6114886  T
Q  353 tgtcaatttttat 365  Q
      |||||||||||    
T  6114885 catcaatttttat 6114873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 38173039 - 38172982
Alignment:
Q  150 ccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  38173039 ccaaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaa 38172982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 40118144 - 40118247
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    ||||||||||||||||||||| ||| ||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||  ||||||||  ||||||||||    
T  40118144 cataaacaaattaaatggacaatgaatttattgcaaataatctattag-tttacatt-gaaaatatattattaatctacctagtaaacactcaattatgg 40118241  T
Q  302 ataaaa 307  Q
    | ||||    
T  40118242 aaaaaa 40118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 1233840 - 1233756
Alignment:
Q  123 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| || ||| |||||  |||||||||||||||||| ||||||||||||||| ||| ||  |||| ||||||||||||||||    
T  1233840 gttggtatatatttatatttagctaccccaaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaa 1233756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 5808907 - 5808853
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaat 198  Q
    |||||||||||||||||| |||||||||||||||| |||||  ||||||||||||    
T  5808907 gctaccccaaataataaatattgagctaccccaaataaatttggttgtcgaaaat 5808853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 4072291 - 4072227
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  4072291 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 4072227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 21441657 - 21441593
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  21441657 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 21441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 13641196 - 13641112
Alignment:
Q  123 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| || ||| |||||  |||||| ||||||||||| ||||||||||||||| ||| ||  |||| ||||||||||||||||    
T  13641196 gttggtatatatttatatttagctacctcaaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaa 13641112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 13741608 - 13741524
Alignment:
Q  123 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| || ||| |||||  |||||| ||||||||||| ||||||||||||||| ||| ||  |||| ||||||||||||||||    
T  13741608 gttggtatatatttatatttagctacctcaaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaa 13741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 33613707 - 33613745
Alignment:
Q  210 aattaaatggacattgagtttcttgcaaataacctattt 248  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctattt 33613745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 41323245 - 41323181
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||| ||||||  |||||||| ||||||||    
T  41323245 catagacaaattaaatgtacaatgagtttcttgcaaataaactattt-atttacatttgaaaagac 41323181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 1233641 - 1233564
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    ||||| |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  1233641 ttcttacaaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 1233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 13640997 - 13640920
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    ||||| |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  13640997 ttcttacaaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 13640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 13741409 - 13741332
Alignment:
Q  229 ttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    ||||| |||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||  |||||||||||||||||||    
T  13741409 ttcttacaaataacctattg--tttacattg-aaaagacattagtaatct-tttattaaacaatcaattatggataaaattg 13741332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 43115046 - 43115087
Alignment:
Q  150 ccaaataataaacattgagctaccccaaacaaattcagttgt 191  Q
    |||||||||||| ||||||||||| ||||||||||| |||||    
T  43115046 ccaaataataaatattgagctacctcaaacaaattccgttgt 43115087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 54 - 371
Target Start/End: Original strand, 22785880 - 22786196
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||||||||||||    
T  22785880 caggggcgtagcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatctttaattggttggtataaatttattttcggctaccccaa 22785979  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgtttt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  22785980 ataataaacattgagctaccccaaacaaattcagttgtcgaaagctagcataaacaatttaaatggacattgaatttcttgcaaataacctatttg-ttt 22786078  T
Q  254 acattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatt 353  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  22786079 acattggaaaagacattattaatctatttagtaaacggtcgattatggataaaattggcttcttgaaatgcattttacccaacttttttaaatagctatt 22786178  T
Q  354 gtcaatttttatcctttg 371  Q
    || |||| ||||||||||    
T  22786179 gttaattcttatcctttg 22786196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 65 - 371
Target Start/End: Complemental strand, 6017044 - 6016739
Alignment:
Q  65 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 164  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||| || || ||||||||||||||||||||||    
T  6017044 cccttcattggcaaggggtagccttggctaccccaaaaattatattaatctttaattggttggtataaatttatttttggctaccccaaataataaacat 6016945  T
Q  165 tgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaa 264  Q
    ||||||||||||||||||||||||||||||||  || ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  6016944 tgagctaccccaaacaaattcagttgtcgaaagctagcataaacaatttaaatgtacattgagtttcttgcaaataacctatttg-tttacattgaaaaa 6016846  T
Q  265 gacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaattttta 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6016845 gacattattaatctatttagtaaacggtcaattatggataaaattggcttattgaaatgcattttacccaacttttttaaatagctattgtcaattttta 6016746  T
Q  365 tcctttg 371  Q
    |||||||    
T  6016745 tcctttg 6016739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 65 - 371
Target Start/End: Original strand, 2407018 - 2407324
Alignment:
Q  65 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 164  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||| || ||| |||||||||||||||||||||    
T  2407018 cccttcattggcaaggggtagccttggctacctcaaaaaatatattaatctttaattggttggtataaatttattttcagctaccccaaataataaacat 2407117  T
Q  165 tgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgg-aaa 263  Q
    |||||||||||||  |||||||||||||||||  || ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||    
T  2407118 tgagctaccccaactaaattcagttgtcgaaagctagcataaacaatttaaatggacattgaatttcttgcaaataacctatttg-tttacattggaaaa 2407216  T
Q  264 agacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaattttt 363  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||| ||    
T  2407217 agacattattaatctatttagtaaacggtcaattattgataaaattgacttcttgaaatgcattttactcaacttttttaaatagctattgttaattctt 2407316  T
Q  364 atcctttg 371  Q
    ||||||||    
T  2407317 atcctttg 2407324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 21790774 - 21790943
Alignment:
Q  202 cataaacaaattaaatggacattgagtttctt--gcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattat 299  Q
    ||||||||||| ||||||||| ||||||| ||  ||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||  ||||||||    
T  21790774 cataaacaaataaaatggacaatgagttttttttgcaaataacctatttattt-ac-ttggaaaagacattattaatctagttagtaaacaatcaattat 21790871  T
Q  300 ggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||| |||||||  ||||| ||||||||||||| |||||||| |||||| |||  || |||||||||||||||    
T  21790872 ggacaaaattgacttcttaaaatgcattttacccaacttttctaaatacctacggtaaatttttatcctttg 21790943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 371
Target Start/End: Complemental strand, 54166031 - 54165869
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  54166031 cataaataaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 54165938  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    | ||||||| ||||||||||| ||||||   |||||||| | |||| |||||||||||||||||||||||    
T  54165937 aaaaaattgatttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttatcctttg 54165869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 52628294 - 52628465
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatc----tatttagtaaacggtcaatt 297  Q
    |||||| |||||||||| ||| ||||||| |||||||||||||||| | |||||||||||||| | ||||||||||    ||||||||||||  ||||||    
T  52628294 cataaataaattaaatgaacaatgagtttattgcaaataacctattag-tttacattggaaaatatattattaatctatatatttagtaaacactcaatt 52628392  T
Q  298 atggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    ||  |||||| |||||||||||||||||| ||   ||| |||| | ||||||||||||||||||||||||||||    
T  52628393 atttataaaactggtttcttgaaatgcatcttgtccaaattttct-aatagctattgtcaatttttatcctttg 52628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 48861760 - 48861888
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 177  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| ||||||||||||||||||||||||||||| |||||||||||    
T  48861760 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatattcggctaccccaaataataaacattaagctaccccaa 48861859  T
Q  178 acaaattcagttgtcgaaaattaacataaa 207  Q
    | || || ||||| | ||||||| ||||||    
T  48861860 ataagtttagttg-caaaaattagcataaa 48861888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 8745778 - 8745633
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||||||| |||||||||| | ||||||||||||  |||||||| |||||||||||||||||||| ||| ||||  | ||||||| |    
T  8745778 catagacaaattaaatggacaatgagtttcttacgaataacctattt-atttacatttgaaaagacattattaatcta-ttattaaataggcaattattg 8745681  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagc 349  Q
    || ||||||| |||| ||||  |||||| | |||| ||| ||||||||    
T  8745680 atgaaattgggttctcgaaacacattttgcccaacgtttctaaatagc 8745633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 17816040 - 17815897
Alignment:
Q  215 aatggacattgagtttcttgc-aaataac---ctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattg 310  Q
    ||||| || |||||||||||| |||||||   ||||||| ||||||||  |||| ||||||||||||||||| ||||||  |||| ||||||||||||||    
T  17816040 aatgggcaatgagtttcttgcaaaataacttactatttg-tttacatt-aaaaaaacattattaatctattttgtaaacaatcaactatggataaaattg 17815943  T
Q  311 gtttcttgaaatgcattttacacaacttttttaaatagctattgtc 356  Q
      ||||| ||| ||||||| | ||||||||||||||||||||||||    
T  17815942 acttctttaaacgcattttgcccaacttttttaaatagctattgtc 17815897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 11950592 - 11950720
Alignment:
Q  253 tacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaacttttttaaatagctat 352  Q
    ||||| ||||||||||| |||||||||||| |||||  |||| ||||| || ||||||| ||||||||    |||||   |||||||| |||||||||||    
T  11950592 tacatcggaaaagacatcattaatctattttgtaaatagtcatttatgaattaaattggcttcttgaagcagattttgtccaacttttctaaatagctat 11950691  T
Q  353 tgtcaatttttatcctttgctactcctct 381  Q
    |||||||||||||| |||| |||| ||||    
T  11950692 tgtcaatttttatcatttgttactgctct 11950720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 21790525 - 21790652
Alignment:
Q  79 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 178  Q
    |||||||||| || || |||||||||||||||| |||| ||  ||||| | |||||| ||||||  |||||| |||||||||| ||||||| |||  |||    
T  21790525 ggggtagcct-ggttatcccaaaaaatatattattcttcaaatagttgttataaatttatattcaactaccctaaataataaatattgagccaccataaa 21790623  T
Q  179 caaattcagttgtcgaaaattaacataaa 207  Q
     ||||||||||| ||||||||||||||||    
T  21790624 taaattcagttgccgaaaattaacataaa 21790652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 48841184 - 48841262
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||||||||||||| | || ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  48841184 catagacaaattaaatggataatgggtttcttgcaaataacctattt-atttacatttgaaaagacattattaatctatt 48841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 48862014 - 48862134
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||||||||  |||| ||||||||||||||||||| |||||  ||||||||  ||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  48862014 acaaattaaacagacaatgagtttcttgcaaataacatattt-atttacatttaaaaagtcattattaatcta-ttattaaacagacaattattgatgaa 48862111  T
Q  307 attggtttcttgaaatgcatttt 329  Q
    ||||| ||||| |||||||||||    
T  48862112 attgggttcttcaaatgcatttt 48862134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 52628100 - 52628170
Alignment:
Q  137 atattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  52628100 atatccggctacctcaaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaa 52628170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 8762982 - 8762829
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 153  Q
    ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||  |||| |||| |||||| ||  || |||||  ||||||||||    
T  8762982 caggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaagtattgttcttgaatatgttggtatatttttatatttagctaccccaa 8762883  T
Q  154 ataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||| ||| ||| |||||||||||| ||||| | ||||  ||||||||||||||    
T  8762882 ataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaa 8762829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 48840949 - 48841043
Alignment:
Q  85 gccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaaca 180  Q
    |||||||||||||||||||| | |||| ||||||||  || ||| |  ||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  48840949 gccttggctaccccaaaaaaaa-attattctttaattcgtcggtatgtatttatatccggctaccctaaataataaacattgagctaccccaaaca 48841043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 54166216 - 54166160
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaatta 200  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||    
T  54166216 gctatcccaaataataaacattgagctacctcaaacaagttcagttgtctaaaatta 54166160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 16608662 - 16608578
Alignment:
Q  123 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| || ||| |||||  |||||||||||||||||| |||||||||||||||| || ||  |||  ||||||||||||||||    
T  16608662 gttggtatatatttatatttagctaccccaaataataaatattgagctaccccaaaaaagtttggttaccgaaaattaacataaa 16608578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 43892586 - 43892522
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| ||||||||||||  || |||||||||||||||||||||||||  |||||||| ||||||||    
T  43892586 catagacaaattaaatgtgcaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 43892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 8762664 - 8762614
Alignment:
Q  235 caaataacctatttgttttacattggaaaagacattattaatctatttagta 286  Q
    |||||||| ||||||||| |||||| |||||||||||||| |||||||||||    
T  8762664 caaataacttatttgttt-acattgaaaaagacattattagtctatttagta 8762614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 5476447 - 5476394
Alignment:
Q  232 ttgcaaataacctatttgttttacattggaaaagacattattaatctatttagta 286  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| | |||||||||    
T  5476447 ttgcaaataacttatttgttt-acattgaaaaagacattattagtgtatttagta 5476394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 856931 - 856894
Alignment:
Q  163 attgagctaccccaaacaaattcagttgtcgaaaatta 200  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  856931 attgagctaacccaaacaagttcagttgtcgaaaatta 856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 5476347 - 5476315
Alignment:
Q  333 caacttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||||| ||||||||||||||||    
T  5476347 caacttttttaaatagttattgtcaatttttat 5476315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 8762567 - 8762535
Alignment:
Q  333 caacttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||||| ||||||||||||||||    
T  8762567 caacttttttaaatagttattgtcaatttttat 8762535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 65 - 371
Target Start/End: Complemental strand, 40528392 - 40528085
Alignment:
Q  65 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 164  Q
    |||||||||| |||||| ||| ||||||||||  ||||||||||||||||||||||  |||||| |||||| ||||||| ||| || |||||||||||||    
T  40528392 cccttcattggcaagggatagtcttggctaccttaaaaaatatattaatctttaattggttggtataaatttatattcgactatcctaaataataaacat 40528293  T
Q  165 tgagctaccccaaacaaattcagttgtcgaaaattaacataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaa 264  Q
    ||||||||||||| |||||||||||| |||||| || |||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||| ||||    
T  40528292 tgagctaccccaagcaaattcagttgccgaaaactagcataaacaaattaagtggatattgagtttcttacaaataacctatttg-tttacattgaaaaa 40528194  T
Q  265 gacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcatttta--cacaacttttttaaatagctattgtcaatttt 362  Q
    ||||||||||||| |||||||||||| |||| ||| ||||||||||| ||||||||||||||||||  || ||     ||||||||||||||||||||||    
T  40528193 gacattattaatcaatttagtaaacgatcaaatatagataaaattggcttcttgaaatgcattttacccaaaaaaaaattaaatagctattgtcaatttt 40528094  T
Q  363 tatcctttg 371  Q
    |||||||||    
T  40528093 tatcctttg 40528085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 16908717 - 16908551
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    ||||| |||||||||||||| | |||||||| ||| |||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  16908717 ataaataaattaaatggacaat-agtttctttcaagtaacctatttgttt-acattgaaaaatacattattaatctatttagtaaacagtcaattatgga 16908620  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||| |||| || |||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||    
T  16908619 taaatttggctttttgaaatgcattttacccaacttttctaaataattattgtcaatttttatcctttg 16908551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 224 - 371
Target Start/End: Complemental strand, 40361080 - 40360936
Alignment:
Q  224 tgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatg 323  Q
    ||||||||||||||||||||||||||||| | ||   |||||||||||||||||||||| |||||| ||||||||||||||||||||   |||||||| |    
T  40361080 tgagtttcttgcaaataacctatttgttt-agatcataaaagacattattaatctattttgtaaacagtcaattatggataaaattg--atcttgaaaag 40360984  T
Q  324 cattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||| | ||| ||||||||||| ||||| |||||||||||| ||||    
T  40360983 cattttgcccaaattttttaaataactattttcaatttttatcatttg 40360936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 16908979 - 16908840
Alignment:
Q  65 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 164  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||| |||| | |  |||||| || ||| |||| |||||||| ||||||||||| ||    
T  16908979 cccttcatggacaaggggcagccttggctaccccaaaaaa-atattattcttcatttggttggtatatatttatatccggctacctcaaataataaatat 16908881  T
Q  165 tgagctaccccaaacaaattcagttgtcgaaaattaacataa 206  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||    
T  16908880 tgagcta-cccaaacaaattcagttgttgaatattaacataa 16908840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 238 - 366
Target Start/End: Original strand, 7008942 - 7009069
Alignment:
Q  238 ataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcattttacacaact 337  Q
    ||||||||||||| | |||||||||||| |||||||||||||||| ||||||  ||  ||||||||||||||||||||||||||   |||||   |||||    
T  7008942 ataacctatttgtgt-acattggaaaaggcattattaatctattttgtaaacaatcgtttatggataaaattggtttcttgaaacagattttgtccaact 7009040  T
Q  338 tttttaaatagctattgtcaatttttatc 366  Q
    || |||||||| |||||||||||||||||    
T  7009041 ttgttaaatagatattgtcaatttttatc 7009069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 34034105 - 34034230
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||  |||||||| |||||||||||||||||||| ||| ||||| | || |||| |    
T  34034105 catagacaaattaaatggacaatgagtttcttgcaaataacttattt-atttacatttgaaaagacattattaatcta-ttattaaacagacagttattg 34034202  T
Q  302 ataaaattggtttcttgaaatgcatttt 329  Q
    || ||||||| ||||| |||||||||||    
T  34034203 atgaaattgggttcttcaaatgcatttt 34034230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 17695969 - 17695850
Alignment:
Q  207 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 306  Q
    ||||| |||||||||| ||||||||||||||||||| |||||  |||||||| ||||| |||||||||||||| ||| ||||| ||||||||| ||| ||    
T  17695969 acaaactaaatggacagtgagtttcttgcaaataacttattt-atttacatttgaaaaaacattattaatcta-ttattaaacagtcaattattgatgaa 17695872  T
Q  307 attggtttcttgaaatgcattt 328  Q
    ||||| ||||||||| ||||||    
T  17695871 attgggttcttgaaacgcattt 17695850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 371
Target Start/End: Complemental strand, 19948915 - 19948752
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||||  |||||||||||| ||| |||||||||||||| ||| ||| ||||||||||| || | ||||||| || |||| ||||||| | ||||||||    
T  19948915 cataaacctattaaatggacaatgaatttcttgcaaataatctagttg-tttacattggagaaaatattattattccattttgtaaacgattaattatgg 19948817  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||    | ||||||||||||||||| | |||||||| || |||| ||||||||||||||||| ||||    
T  19948816 ataaa----gcttcttgaaatgcattttgc-caacttttctatatagttattgtcaatttttatcatttg 19948752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 22098943 - 22099013
Alignment:
Q  137 atattcggctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||| |||||    
T  22098943 atattcggctaccccaaataaaaaatattgagctaccccaaacaagtttagttgtcgaaaattaagataaa 22099013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 41640132 - 41640054
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatt 281  Q
    |||| |||||||||||| ||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||    
T  41640132 catagacaaattaaatgtacaatgagtttcttgcaaataacatattt-atttacatttgaaaagacattattaatctatt 41640054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 3498842 - 3498684
Alignment:
Q  49 acaagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctac 148  Q
    |||| ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||| |||| |||| |||||| |   || |||||  |||||    
T  3498842 acaaccaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctac 3498743  T
Q  149 cccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||||||| ||| ||| |||||||||||| ||||| | ||||  ||||||||||||||    
T  3498742 cccaaataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaa 3498684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 34033839 - 34033967
Alignment:
Q  78 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 177  Q
    ||||||||||||||||||||||||||| |||||| |||| ||| ||| ||| |  ||| ||||  ||||||||||| |||||||||||  |||||| |||    
T  34033839 aggggtagccttggctaccccaaaaaaaatattattcttgaattagtcggtatgtattgatatctggctaccccaattaataaacatttggctacctcaa 34033938  T
Q  178 acaaattcagttgtcgaaaattaacataaa 207  Q
    |||| || ||||| | ||||||| ||||||    
T  34033939 acaagtttagttg-caaaaattagcataaa 34033967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 13517580 - 13517644
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  13517580 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 13517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 17769040 - 17768976
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagac 267  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||    
T  17769040 catagacaaattaaatgtacaatgagtttcttgcaaataacctattt-atttacatttgaaaagac 17768976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 42353164 - 42353304
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    ||||||| |||||| ||||| | ||||| ||| ||||||| | ||||||| |||||| ||||  ||||| ||||||||||| ||||| ||||||||||||    
T  42353164 ataaacagattaaaaggacaataagttt-ttgaaaataacttgtttgttt-acattgaaaaa--cattaataatctatttattaaacagtcaattatgga 42353259  T
Q  303 taaaattggtttcttgaaatgcattttacacaacttttttaaata 347  Q
    ||||||||  ||| | |||| | |||| | ||| |||||||||||    
T  42353260 taaaattgacttcataaaatacgttttgcccaaattttttaaata 42353304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 19949097 - 19949035
Alignment:
Q  145 ctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||||| |||||||||||||||||||   |||| || || ||||||||||||||||||||||    
T  19949097 ctaccccgaataataaacattgagctatttcaaataagtttagttgtcgaaaattaacataaa 19949035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 14521651 - 14521753
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgga 302  Q
    |||||||||||||| | ||| | ||||  ||||||||||| | ||||||| |||||| |||| |||||| |||| |||||| ||||| ||||||||||||    
T  14521651 ataaacaaattaaaagtacaataagttg-ttgcaaataacttgtttgttt-acattgaaaaa-acattaataatatatttattaaacagtcaattatgga 14521747  T
Q  303 taaaat 308  Q
    ||||||    
T  14521748 taaaat 14521753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 7008761 - 7008811
Alignment:
Q  54 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaa 104  Q
    |||||||| |||| |||||||  |||||||||||||||||||| |||||||    
T  7008761 caggggcgtatcctttcattgtgaaggggtagccttggctacctcaaaaaa 7008811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 3498423 - 3498391
Alignment:
Q  333 caacttttttaaatagctattgtcaatttttat 365  Q
    |||||||||||||||| ||||||||||||||||    
T  3498423 caacttttttaaatagttattgtcaatttttat 3498391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 42352990 - 42353054
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaa-ttcagttgtcgaaaattaacataaa 207  Q
    ||||| |||||||||||| |||||||||||||||| ||| ||   ||||||||||||| ||||||    
T  42352990 gctactccaaataataaatattgagctaccccaaataaacttggtttgtcgaaaattagcataaa 42353054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 22726 - 22893
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||  |||||||||     
T  22726 cataaacatattaaatgggcattgaatttcttgcaaataacctatttgttt-acattggaaaaaacattattaatctattttgtaaacaatcaattatga 22824  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttg 371  Q
    |||||||||  |||||||||| ||||||   ||| |||| ||||||| ||||||||||||||||| ||||    
T  22825 ataaaattgacttcttgaaat-cattttgtccaaattttctaaatagttattgtcaatttttatcatttg 22893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 6917 - 7056
Alignment:
Q  67 cttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattg 166  Q
    |||||| || ||| |||||||||||||||||| |||||||||||| |||| |||   ||||| |||||| |||| |||||| || |||||||||| ||||    
T  6917 cttcatagataagaggtagccttggctacccccaaaaatatattattcttcaattgtttggtataaatttatatccggctaacctaaataataaatattg 7016  T
Q  167 agctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    ||||| |||||||||||| ||||||||||||||| ||||||    
T  7017 agcta-cccaaacaaatttagttgtcgaaaattagcataaa 7056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 298
Target Start/End: Complemental strand, 428426 - 428333
Alignment:
Q  203 ataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaatta 298  Q
    |||||||||||||||||||| | |||||||| ||||||| ||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||    
T  428426 ataaacaaattaaatggacaat-agtttcttacaaataatctatttgctt-acattggaaaatacattattaatctatttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 428611 - 428548
Alignment:
Q  144 gctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  428611 gctacctcaaataataaacattgagctaccctaaataaattcagttgtcaaaaattaatataaa 428548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 7159 - 7097
Alignment:
Q  145 ctaccccaaataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacataaa 207  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  7159 ctaccccaaataataaacattgagttaccccaaacaagttcagttgtcgaaaattaagataaa 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 348
Target Start/End: Complemental strand, 292332 - 292188
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 301  Q
    |||| |||||||||||| ||| |||||||||||| ||||||||||||  |||| ||| ||||||||| |||||||||| ||| ||||| | ||||||| |    
T  292332 catagacaaattaaatgaacaatgagtttcttgcgaataacctattt-atttatatttgaaaagacactattaatcta-ttattaaacaggcaattattg 292235  T
Q  302 ataaaattggtttcttgaaatgcattttacacaacttttttaaatag 348  Q
    || ||||||| |||||||||  |||||| | |||| ||| |||||||    
T  292234 atgaaattgggttcttgaaacacattttgcccaacgtttctaaatag 292188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 6701 - 6773
Alignment:
Q  202 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaa 275  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||  |||||||| ||||||||||||||||    
T  6701 catagacaaattaaatggacaatgaatttcttgcaaataacctattt-atttacatttgaaaagacattattaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 6516 - 6562
Alignment:
Q  138 tattcggctaccccaaataataaacattgagctaccccaaacaaatt 184  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||    
T  6516 tattcggctacctcaaataataaatattgagctactccaaacaaatt 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 819 - 935
Alignment:
Q  224 tgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatg 323  Q
    |||||||| |||||||||||||||| | | ||||  ||||||| |||||||||||||| | ||||| | || |||| ||| ||||||| |||||||||||    
T  819 tgagtttcatgcaaataacctatttatat-acatctgaaaagatattattaatctatt-attaaacagacatttattgatgaaattgggttcttgaaatg 916  T
Q  324 cattttacacaactttttt 342  Q
    |||||| | |||| |||||    
T  917 cattttgcccaacattttt 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 20141 - 20255
Alignment:
Q  94 accccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcag-ttgtc 192  Q
    ||||||||||||| |||| | || |||  |||||| |||| | | |||  ||||| |||||||||||| |||||||||||||||| |||||  | |||||    
T  20141 accccaaaaaataaattatttttgaattggttggtataaaattacatttagctactccaaataataaatattgagctaccccaaataaatttggtttgtc 20240  T
Q  193 gaaaattaacataaa 207  Q
    |||||||| ||||||    
T  20241 gaaaattagcataaa 20255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University