View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18765_low_15 (Length: 300)
Name: NF18765_low_15
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 24062053 - 24062348
Alignment:
| Q |
1 |
tgagtctatttgcgacttcatcgagaggttcaacaaggaagtcatccaagtctgaggagtgatgaagaattgaagatgtatctact-aaaaaaggtctcc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24062053 |
tgagtctatttgcgacttcatcgagaggttcaacaaggaagtcatccaagtctgaggagtgatgaagaattgaagatgtatctactgaaaaaaggtctcc |
24062152 |
T |
|
| Q |
100 |
aacaaggaaccgatttccgcaaggcgacaggcatcgaggacccacatccctcaacgagtttctcaacctcgcaaaatccaacatcaggtacgacgagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24062153 |
gacaaggaaccgatttccgcaaggcgacaggcatcgaggacccacatccctcaacgagtttctcaacctcgcaaaatccaacatcaggtacgaggagaaa |
24062252 |
T |
|
| Q |
200 |
ctcattgccagttattttggaaatcaagaaaagaggatcctcaagaaaaatcctcctaaaaactcaatcaattcaagacaaatgctaaaaacaaat |
295 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24062253 |
ctcatcgccagttattttggaaatcaagaaaagaggatcctcaagaaaaatcctcctaaaaactcaatcaattcaagacaaatgctaagaacaaat |
24062348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 16701878 - 16701919
Alignment:
| Q |
146 |
tccctcaacgagtttctcaacctcgcaaaatccaacatcagg |
187 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
16701878 |
tccctcgacgagtttctcaacctcgcaaaaacctacatcagg |
16701919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University