View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_low_16 (Length: 288)
Name: NF18765_low_16
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1750410 - 1750680
Alignment:
| Q |
1 |
tcagttatgtatgaattccaatgctcctgcaaagcaaacaaagctcaaaattaagatgatatggaaatccaacaaagattttcaacaagtcatagtttct |
100 |
Q |
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| T |
1750410 |
tcagttatgtatgaattccaatgctcctgcaaagcaaacaaagctcaaaatttagatgatatggaaatccaacaaagattt-caacaagtcatagtttct |
1750508 |
T |
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| Q |
101 |
catgaaaagtttataggaattctcacccttaagacttgaggggctctatcaggaccataaccattagttagttggtactctccttctaaagttcttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1750509 |
catgaaaagtttataggaattctcacccttaagacttgaggggctctatcaggaccataaccattagtaagttggtactctccttctaaagttcttacaa |
1750608 |
T |
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| Q |
201 |
ttgtcattttaaagactgatgggtcactttcttcccaatttgtgccttgataatttgctgtcactaatgtct |
272 |
Q |
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| T |
1750609 |
ttgtcattttaaagactgatgggtcactttcttcccaatttgtgccttgataatttgctgtcactaatgtct |
1750680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1755474 - 1755748
Alignment:
| Q |
1 |
tcagttatgtatgaattccaatgctcctgcaaagcaaacaaagctcaaaattaagatgatatggaaatccaacaaagattttcaacaagtcatagtttct |
100 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1755474 |
tcagttatgtaagaattccaatggtcctgcaaagcaaacaaagctcaaaattaagatgatatggaaatccaacaaagattttcaacaagtaatagtttct |
1755573 |
T |
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| Q |
101 |
catgaaaagtttataggaattctcacccttaagacttgaggggctctatcaggaccataaccattagttagttggtactctccttctaaagttcttacaa |
200 |
Q |
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| T |
1755574 |
catgaaaattttataggaattctcacccttaacacttgaggagctttatctggaccataaccattagtaagttggtactctccttctaaagttcttacaa |
1755673 |
T |
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| Q |
201 |
ttgtcattttaaagactgatgggtcactttcttcccaatttgtgccttg---ataatttgctgtcactaatgtct |
272 |
Q |
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| T |
1755674 |
ttttcatacgaaatactgatgggtcactttcttcccaacttgtgccttgaccataatcagctgtcactaatgtct |
1755748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 1718838 - 1718956
Alignment:
| Q |
155 |
ccataaccattagttagttggtactctccttctaaagttcttacaattgtcattttaaagactgatgggtcactttcttcccaatttgtgccttgataat |
254 |
Q |
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| T |
1718838 |
ccataaccattagtaagttggtactctccttgtaatgtgtttacaattgtcatatgaaaaactgatggatcattgtcatcccaatttgtgccttgataat |
1718937 |
T |
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| Q |
255 |
ttgctgtcactaatgtctt |
273 |
Q |
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||| ||||| ||||||| |
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| T |
1718938 |
ctgcaatcactgatgtctt |
1718956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 1740176 - 1740294
Alignment:
| Q |
155 |
ccataaccattagttagttggtactctccttctaaagttcttacaattgtcattttaaagactgatgggtcactttcttcccaatttgtgccttgataat |
254 |
Q |
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|||||||||||||| |||||||||||||||| ||| || ||||| ||||||| | ||| |||||||| ||| | || |||||||||||||||||||||| |
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| T |
1740176 |
ccataaccattagtaagttggtactctccttgtaatgtgtttacatttgtcatatgaaaaactgatggatcattgtcatcccaatttgtgccttgataat |
1740275 |
T |
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| Q |
255 |
ttgctgtcactaatgtctt |
273 |
Q |
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||| ||||| ||||||| |
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| T |
1740276 |
ctgcaatcactgatgtctt |
1740294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1718699 - 1718746
Alignment:
| Q |
1 |
tcagttatgtatgaattccaatgctcctgcaaagcaaacaaagctcaa |
48 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
1718699 |
tcagttatgtacgaattccaatgctcctgcaaagcaaacaaagttcaa |
1718746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1740037 - 1740084
Alignment:
| Q |
1 |
tcagttatgtatgaattccaatgctcctgcaaagcaaacaaagctcaa |
48 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1740037 |
tcagttatgtataaattccaatgctcctgcaaagcaaacaaagttcaa |
1740084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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