View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_low_20 (Length: 236)
Name: NF18765_low_20
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41876742 - 41876522
Alignment:
| Q |
1 |
actttccatgcccacgttttgtacataaataagtagtagtgccacatctattatgattaatatgtatacaatccatcactgaaatagaagaaaagaatat |
100 |
Q |
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| T |
41876742 |
actttccatgcccacgttttgtacataaataagtagtagtgccacatctattatgattaatatgtatacaatccatcactgaaatagaagaaaagaatat |
41876643 |
T |
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| Q |
101 |
taggtcgtgtaacagtttggaacaacaaatccaaaacgaatcttcataatgttcagactgactgaaccattaaaatatttaaaacaaattttacaaatac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876642 |
taggtcgtgtaacagtttggaacaacaaattcaaaacgaatcttcataatgttcagactgactgaaccattaaaatatttaaaacaaattttacaaatac |
41876543 |
T |
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| Q |
201 |
aaatgcatatatactaactct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41876542 |
aaatgcatatatactaactct |
41876522 |
T |
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