View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18765_low_3 (Length: 675)
Name: NF18765_low_3
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 78 - 663
Target Start/End: Original strand, 5810555 - 5811140
Alignment:
| Q |
78 |
ttttgttaaagcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacattgta |
177 |
Q |
| |
|
|||| ||| |||| ||||||| ||| | | |||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5810555 |
ttttcttatagcgattaaaaatctctttaatgacaccttcaccaaagtgactagctagcaaaggttcagccacagcccttatgcattgtgccacattgta |
5810654 |
T |
|
| Q |
178 |
tccatcatcaaattgatcccaattatcgagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaac |
277 |
Q |
| |
|
|||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5810655 |
tccatcattaaaatgatcccaattgtcaagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcggtgagaacttccaac |
5810754 |
T |
|
| Q |
278 |
tcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcggcataataatatgcatattaatag |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5810755 |
tcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcggcataataatatgcatattaatag |
5810854 |
T |
|
| Q |
378 |
ttaannnnnnnn-cttcaaaattttggaattttttctcatattcacccacgtatttattgtgttctatgaccattttctaaattaatatgaacaagaaaa |
476 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5810855 |
ttaatttttttttcttcaaaattttggaatttt-tctcatattcacccacgtatttattgtgttctatgaccattttctaaattaatatgaacaagaaaa |
5810953 |
T |
|
| Q |
477 |
aattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5810954 |
aattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcg |
5811053 |
T |
|
| Q |
577 |
tcctaaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagnnnnnnngagaaatctgtttgaaattg |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5811054 |
tcctaaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattg |
5811140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 32702574 - 32702743
Alignment:
| Q |
17 |
tatggtaatatttatgaccttagttttctctttgggcagggcagcatgtgatcggttgcatttttgttaaagcggttaaaaacctcctcagtgacacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32702574 |
tatggtaatatttatgaccttagttttctctttgggc-----agcatgtgatcggttgcatttttgttaaagcggttaaaaacctcctcagtgacacctt |
32702668 |
T |
|
| Q |
117 |
caccaaaatgactaac---aaacaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatcaa |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
32702669 |
caccaaaatgactaaccaacaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaa |
32702743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 481 - 636
Target Start/End: Original strand, 32627333 - 32627488
Alignment:
| Q |
481 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct |
580 |
Q |
| |
|
|||||| | ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||| | |||||| |||| |
|
|
| T |
32627333 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct |
32627432 |
T |
|
| Q |
581 |
aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgag |
636 |
Q |
| |
|
| |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
32627433 |
acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgag |
32627488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 110 - 335
Target Start/End: Original strand, 32626882 - 32627116
Alignment:
| Q |
110 |
acaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatc----aa--attga---tcccaat |
200 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||| ||| || ||||||||||||||||||||||||||||| || ||| | || ||| |
|
|
| T |
32626882 |
acaccttcaccaaaatgactgactagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccatcatctccgaatgattcagattcaaaat |
32626981 |
T |
|
| Q |
201 |
tatcgagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggata |
300 |
Q |
| |
|
||| ||||||||||||| |||||||| | ||| | | || | ||| |||||||||||||| | ||||||||| | || ||||||||||||||||| |
|
|
| T |
32626982 |
catcacgagcattccaattcacttcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggata |
32627081 |
T |
|
| Q |
301 |
atagttagggatgttgaaactattgagtttctctt |
335 |
Q |
| |
|
||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
32627082 |
atatataggaatgttgaaagtattgagtttctctt |
32627116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 490 - 636
Target Start/End: Original strand, 32708923 - 32709069
Alignment:
| Q |
490 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgt---tttttcgtcctaaaaat |
586 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| || || ||| |||||| |||||||||| |
|
|
| T |
32708923 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct--atacttct-tgtcactttttcttcctaaaaat |
32709019 |
T |
|
| Q |
587 |
gttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgag |
636 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
32709020 |
gttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgag |
32709069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 564
Target Start/End: Original strand, 32703480 - 32703566
Alignment:
| Q |
478 |
attatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatc |
564 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||| |||||||||| | |||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
32703480 |
attatcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatc |
32703566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 32708666 - 32708779
Alignment:
| Q |
206 |
agagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagt |
305 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| || | |
|
|
| T |
32708666 |
agagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtatt |
32708765 |
T |
|
| Q |
306 |
tagggatgttgaaa |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32708766 |
gagggatgttgaaa |
32708779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 7297160 - 7297212
Alignment:
| Q |
251 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataata |
303 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
7297160 |
aatgatccttcattgagaacttctaactcaacttcatatggtgatggataata |
7297212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 197 - 358
Target Start/End: Original strand, 27736007 - 27736168
Alignment:
| Q |
197 |
caattatcgagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatg |
296 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||| | ||||| |||||||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
27736007 |
caatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatg |
27736106 |
T |
|
| Q |
297 |
gataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcggcata |
358 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||| || ||||||||||||| ||||| |
|
|
| T |
27736107 |
gataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgcagcata |
27736168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 490 - 630
Target Start/End: Original strand, 27736240 - 27736380
Alignment:
| Q |
490 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcctaaaaatgtt |
589 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| | ||| | |||||||| |||| |
|
|
| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
590 |
agaatcatgtgaccaccttcaactagttcttcggcacgaca |
630 |
Q |
| |
|
|||||||| ||| | |||||||||| ||||| ||||||||| |
|
|
| T |
27736340 |
agaatcatttgagctccttcaactaattctttggcacgaca |
27736380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 27735885 - 27735963
Alignment:
| Q |
108 |
tgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatc |
186 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27735885 |
tgacaccttcaccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccatcatc |
27735963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 20117983 - 20117882
Alignment:
| Q |
251 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
350 |
Q |
| |
|
||||| |||||||| ||||||||||| | || |||| ||||||||||||||||||||||| |||||| ||||||| |||||| || |||||||||| |
|
|
| T |
20117983 |
aatgacccttcagttagaacttccaatttcacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatgattccct |
20117884 |
T |
|
| Q |
351 |
gc |
352 |
Q |
| |
|
|| |
|
|
| T |
20117883 |
gc |
20117882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 21941867 - 21941968
Alignment:
| Q |
251 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
350 |
Q |
| |
|
|||||| ||||||| |||||||||| | | ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
21941867 |
aatgattcttcagttagaacttccacttttatttcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattccct |
21941966 |
T |
|
| Q |
351 |
gc |
352 |
Q |
| |
|
|| |
|
|
| T |
21941967 |
gc |
21941968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 21941694 - 21941752
Alignment:
| Q |
87 |
agcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttca |
145 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
21941694 |
agcggttaaatacctcttcagtcacaccttcaccaaaatgactaataagcaaaggttca |
21941752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 21943082 - 21943132
Alignment:
| Q |
485 |
tagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaa |
535 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21943082 |
tagtctacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 636
Target Start/End: Complemental strand, 20116801 - 20116664
Alignment:
| Q |
499 |
aaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcctaaaaatgttagaatcatg |
598 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||||| | | | |||||| |||||||| ||| || ||||| |||||| ||||||||| |
|
|
| T |
20116801 |
aaccatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatg |
20116702 |
T |
|
| Q |
599 |
tgaccaccttcaactagttcttcggcacgacacttgag |
636 |
Q |
| |
|
||| |||||||| | ||||| ||||||||||||||| |
|
|
| T |
20116701 |
caacctccttcaaccaattctttggcacgacacttgag |
20116664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 633
Target Start/End: Original strand, 21943164 - 21943218
Alignment:
| Q |
579 |
ctaaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacactt |
633 |
Q |
| |
|
|||||||||||| || |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
21943164 |
ctaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactt |
21943218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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