View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18765_low_4 (Length: 626)

Name: NF18765_low_4
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18765_low_4
NF18765_low_4
[»] chr5 (3 HSPs)
chr5 (296-617)||(32093540-32093859)
chr5 (80-294)||(32093276-32093477)
chr5 (188-231)||(29266103-29266146)
[»] chr1 (2 HSPs)
chr1 (157-233)||(4254155-4254231)
chr1 (188-234)||(1031622-1031668)
[»] chr7 (1 HSPs)
chr7 (183-241)||(23827962-23828020)
[»] chr6 (2 HSPs)
chr6 (188-241)||(33941321-33941374)
chr6 (190-234)||(9455876-9455920)
[»] chr4 (1 HSPs)
chr4 (177-220)||(22433371-22433414)
[»] chr2 (1 HSPs)
chr2 (177-234)||(12839381-12839438)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 296 - 617
Target Start/End: Original strand, 32093540 - 32093859
Alignment:
Q  296 catggttttttaatcaatatgaccatgctttttctttaatcaggtaactatgacctaagaataaaaaagggagtccaaatttaaaaccttgatccaaaat 395  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32093540 catggttttttaatcaatatgaccatgatttttctttaatcaggtaactatgacctaagaataaaaaagggagtccaaatttaagaccttgatccaaaat 32093639  T
Q  396 gcttatttttgttcttgaagagttccaaagagagtctgaggcatcaagttgtaacttctgacc-tttgatgctggctcacctacttccacagaaagagac 494  Q
    ||||| ||||||||||||||||| |   | ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32093640 gctta-ttttgttcttgaagagtcc---acagagtctgaggcagcaagttgtaacttctgaccttttgatgctggctcacctacttccacagaaagagac 32093735  T
Q  495 acaaaaacaaacacaaaaacaaaccnnnnnnnnnnnnnnnnnnnnacacaacacaacaaagtgacaaacctaactcaaactaaaacacgatacattacag 594  Q
    |||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32093736 acaaaaacaaacacaaaaacaaacctttttgtttttaatttttttacacaacacaacaaagtgacaaacctaactcaaactaaaacacgataca-tacag 32093834  T
Q  595 at--agtcgcccattactattcatc 617  Q
    ||  |||||||||||||||||||||    
T  32093835 atacagtcgcccattactattcatc 32093859  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 32093276 - 32093477
Alignment:
Q  80 tatagttgacatgaacaagagttaattgcatgattatattcactaatnnnnnnnntaatccaatgacgtctatataattttaacttagttgataattaca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| |||||| ||| |||||||||||||||||||| |    
T  32093276 tatagttgacatgaacaagagttaattgcatgattatattcactaataaaaaa---aatccaatgatgtctatgtaagtttaacttagttgataattata 32093372  T
Q  180 tttcataatatatgtaggggtcagagttcgaacttc-aaacaccacacttattcactctaaaagataaactaaatcttataaaattaaggacacaattta 278  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||| |||||||||||||    
T  32093373 tttcataatatatgta-gggtcagagttcgaacttcaaaacaccacacttatt----------gataaactaaatcttataaaattgaggacacaattta 32093461  T
Q  279 taaaattccaataaaa 294  Q
    ||||||||||||||||    
T  32093462 taaaattccaataaaa 32093477  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 29266103 - 29266146
Alignment:
Q  188 tatatgtaggggtcagagttcgaacttcaaacaccacacttatt 231  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||    
T  29266103 tatatgcaggggtcagagttcgaacatcagacaccacacttatt 29266146  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 4254155 - 4254231
Alignment:
Q  157 ttttaacttagttgataattacatttcataatatatgtaggggtcagagttcgaacttcaaacaccacacttattca 233  Q
    |||||||| ||||||||| |||||| |||||||||||||| |||  | ||||||||||  |||||| ||||||||||    
T  4254155 ttttaactcagttgataagtacattacataatatatgtagaggttggggttcgaacttggaacacctcacttattca 4254231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 1031622 - 1031668
Alignment:
Q  188 tatatgtaggggtcagagttcgaacttcaaacaccacacttattcac 234  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||    
T  1031622 tatatgtaggggtcagagttcgaaccccgaacaccccacttattcac 1031668  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 23827962 - 23828020
Alignment:
Q  183 cataatatatgtaggggtcagagttcgaacttcaaacaccacacttattcactctaaaa 241  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||||| |||| |||||    
T  23827962 catattatatgtaggggtcagaattcgaacttcgaacacctcacttatgcactttaaaa 23828020  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 33941374 - 33941321
Alignment:
Q  188 tatatgtaggggtcagagttcgaacttcaaacaccacacttattcactctaaaa 241  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||| |||||    
T  33941374 tatatgtaggggtcagacttcgaacttcgaacacgtcacttattcactttaaaa 33941321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 9455876 - 9455920
Alignment:
Q  190 tatgtaggggtcagagttcgaacttcaaacaccacacttattcac 234  Q
    |||||||||||| ||||||||||  |||||||| |||||||||||    
T  9455876 tatgtaggggtcggagttcgaaccccaaacaccccacttattcac 9455920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 22433414 - 22433371
Alignment:
Q  177 acatttcataatatatgtaggggtcagagttcgaacttcaaaca 220  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||    
T  22433414 acattgcataatatatgaaggggtcagagttcgaacctcaaaca 22433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 12839381 - 12839438
Alignment:
Q  177 acatttcataatatatgtaggggtcagagttcgaacttcaaacaccacacttattcac 234  Q
    ||||| ||||||||||  ||||||| |||||||||| ||||||||  |||||||||||    
T  12839381 acattgcataatatatagaggggtcggagttcgaacatcaaacactccacttattcac 12839438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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