View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_low_5 (Length: 533)
Name: NF18765_low_5
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 1547217 - 1547749
Alignment:
| Q |
1 |
ccatactctcggcgctctagtggactcttgaccatgagttggaaaatgtaattgttgaagtggtgtataaagtagtagtaacagaccttatgaatcactc |
100 |
Q |
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| T |
1547217 |
ccatactctcggcgctctagtggactcttgaccatgagttggaaaatgtaattgttgaagtggtgtataaagtagtagtgacagaccttatgaatcactc |
1547316 |
T |
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| Q |
101 |
gaaggaatattttgatttagggctcatcatagtgcagaatttactaatagataaacgaatgaaattgcacataatctaacataggcaacaccgttcatga |
200 |
Q |
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| T |
1547317 |
aaaggaatattttgatttagggctcatcatagtgcagaatttactaatagataaacgaatgaaattgcacataatctaacataggcaacaccgttcatga |
1547416 |
T |
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| Q |
201 |
ttaatatccnnnnnnnnnnttatatcataatttactttgtattcctct-----tttattttgaaat---gaagtagtttgctattgtgggaaaaataagc |
292 |
Q |
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| T |
1547417 |
ttaatatccaaaaaaaaaattatatcataatttactttgtattcctcttttaatttattttgaaatgaagaagtagtttgctattgtgggaaaaataagc |
1547516 |
T |
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| Q |
293 |
tagcaaattggaattagtccattggagtgaaaacatggaggtaattaagttattttgatgaagtaaaaggagttaagnnnnnnnnnnnnggttcaaatta |
392 |
Q |
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| T |
1547517 |
tagcaaattggaattagtccgttggagagaaaacatggaggtaattaagttattttgatgaagtaaaaggagttaagaaaaagaaaaaaggttcaaatta |
1547616 |
T |
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| Q |
393 |
attgcaacaaccaaaactatagaactggaattggctctagaatttcatctcaaccaaactgaacatgccatgttgacttggcgaacaaacaaaccaaatg |
492 |
Q |
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| T |
1547617 |
attgcaacaacaaaaactatagaactggaattggctctagaatttcatctcaaccaaactgaacatgccatgttgacttggcgaacaaacaaaccaaatg |
1547716 |
T |
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| Q |
493 |
tgtaagtcaatggttgggatagatgatgtccat |
525 |
Q |
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| T |
1547717 |
tgtaagtcaatggttgggatatgtgatgtccat |
1547749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 1543606 - 1543722
Alignment:
| Q |
253 |
ttttgaaatgaagtagtttgctattgtgggaaaaataagctagcaaattggaattagtccattgga-gtgaaaacatggaggtaattaagttattttgat |
351 |
Q |
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| T |
1543606 |
ttttgaaatgaagtagtttgctactgt-ggaaaataaagctagcaaattgaaattagccagtgggatgagaaaacctggaggtaattatgctattttgat |
1543704 |
T |
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| Q |
352 |
gaagtaaaaggagttaag |
369 |
Q |
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| T |
1543705 |
gcagtaaaaggaattaag |
1543722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 1543447 - 1543540
Alignment:
| Q |
110 |
ttttgatttagggctcatcatagtgcagaatttactaatagataaacgaatgaaattgcacataatctaacataggcaacaccgttcatgatta |
203 |
Q |
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| T |
1543447 |
ttttgatttaggagttatcataatgcagaatttattaagagataaactaatgaaatctcacacgatctaacacaggcaacaccttttatgatta |
1543540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 1543773 - 1543822
Alignment:
| Q |
448 |
aaactgaacatgccatgttgacttggcgaacaaacaaaccaaatgtgtaa |
497 |
Q |
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| T |
1543773 |
aaactaaacatgccaagttgacttggcgagcaaacaaaccaaatgtgtaa |
1543822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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