View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_low_7 (Length: 440)
Name: NF18765_low_7
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 31531210 - 31531533
Alignment:
| Q |
1 |
gactaaaaacatatttacgaaataaaattatgtgatacctttaaatgagaaaaataggtgagttgtagaatagagagatattcctccacaccaacatgaa |
100 |
Q |
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| T |
31531210 |
gactaaaaacatatttacgaattaaaattatgtgatacctttagatgagagaaataggtgagctgtagaatagagagatattcctccacaccaacatgaa |
31531309 |
T |
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| Q |
101 |
attcagtgttgttatttgcaaaatcaaagatgtcattgctacctgtactaattagaaacactgcctttgaaataaaactatcagctttggctgcccccaa |
200 |
Q |
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| T |
31531310 |
attcagtgttgttatttgcaaaatcaaagatgtcattgctacctgtactaattagaaacactgcctttgaaataaaactatcagctttggctgcccccaa |
31531409 |
T |
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| Q |
201 |
aatttgggtgatatttccacggacctgtgcaaattgttgcacctgttttccaaagaaaaccacttcttgctgcaaataggagatcacttaattttattgt |
300 |
Q |
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| T |
31531410 |
aatttgggtgatatttccacggacctgtgcaaattgttgcacctgttttccaaagaaaaccacttcttgctgcaaataggagatcacttaattttattgt |
31531509 |
T |
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| Q |
301 |
ttgaataactatacataactttgt |
324 |
Q |
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| T |
31531510 |
ttaaataactatacataactttgt |
31531533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 31531564 - 31531634
Alignment:
| Q |
354 |
cataaattctactattatatataaatgggttaaatatgttttcatcccaacaaaatcacgggctttcttta |
424 |
Q |
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| T |
31531564 |
catatattctactattatatataaatgggttaaatatgttttcatcccaacaaaatcacgagctttcttta |
31531634 |
T |
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