View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18765_low_8 (Length: 423)
Name: NF18765_low_8
Description: NF18765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18765_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 47711340 - 47711744
Alignment:
| Q |
1 |
ttcattgactaatcagactcgtcttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcggcgaataatattactatgagaaag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711340 |
ttcattgactaatcagactc---ttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcggcgaataatattactatgagaaag |
47711436 |
T |
|
| Q |
101 |
atgaggtgtaatatgcccccctaagtcaagaatgttgatacaggagatgaaccatttactagagacccgccacacttcttctcgcgcaatggtattattt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47711437 |
ataaggtgtaatatgcccccctaagtcaagaatgttgatacaggagatgaaccatttactagagacccgccgcacttcttctcgcgcaatggtattattt |
47711536 |
T |
|
| Q |
201 |
ttgacaataatgaaaattttgaccttgtaatgcagatatttgttgaaaactgagtaaatatttttcctttttgcaatatatgaatgaaaaattcagtatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47711537 |
ttgacaataatgaaaattttgaccttgtaatgcagatatttgttgaaaactgagtaaatatttttcctttttgcaatttatgaatgaaaaattcagtatt |
47711636 |
T |
|
| Q |
301 |
gtatatagaaattagaaacaataaaaaagacaaactttagtactcatgcattgttttggagcacaggtgattgctatgaaatggacaccaattttgatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711637 |
gtatatagaaattagaaacaataaaaaagacaaactttagtactcatgcattgttttggagcacaggtgattgctatgaaatggacaccaattttgatca |
47711736 |
T |
|
| Q |
401 |
tggtcatt |
408 |
Q |
| |
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|||||||| |
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| T |
47711737 |
tggtcatt |
47711744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 43305677 - 43305474
Alignment:
| Q |
2 |
tcattgactaatcagactcgtcttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcggcgaataatattactatgagaaaga |
101 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43305677 |
tcattgactaatcggactcgtcttgaaagttctcctcagattaagaagttgcctgcctcagataaaagtactgcggcgaataatattactgtgagaaaga |
43305578 |
T |
|
| Q |
102 |
tgaggtgtaatatgcccccctaagtcaagaatgttgatacaggagatgaaccatttactagagacccgccacacttcttctcgcgcaatggtattatttt |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
43305577 |
tgaggtgtaatatgc-cccctaagtcaagaatgttgatacaggagatgaaccatttgctagagcgccgccgcacttcttctcgtgcaatggtattatttt |
43305479 |
T |
|
| Q |
202 |
tgaca |
206 |
Q |
| |
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||||| |
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|
| T |
43305478 |
tgaca |
43305474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 45603690 - 45603752
Alignment:
| Q |
346 |
atgcattgttttggagcacaggtgattgctatgaaatggacaccaattttgatcatggtcatt |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45603690 |
atgcattgttttggagcacaggtgattgctatgaaatggacaccaattttgatcatggtcatt |
45603752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 45603623 - 45603672
Alignment:
| Q |
296 |
gtattgtatatagaaattagaaacaataaaaaagacaaactttagtactc |
345 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
45603623 |
gtattgtatacagaaattagaaacaataaaaaagataaactttagcactc |
45603672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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