View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_high_15 (Length: 463)
Name: NF18766_high_15
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 45209501 - 45209275
Alignment:
| Q |
32 |
aaaaatgtattcatgaaaaattgtcaattgagaaaacatcttgtttataagtcagcattatgagaaacatatttgtaaaaagaagaattacataaattgt |
131 |
Q |
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| T |
45209501 |
aaaaatatattcatgaaaaattgtcaattgagaaaacatcttgtttataagtcagcattatgagaaacatatttgtaaaaagaagaattacataaattgt |
45209402 |
T |
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| Q |
132 |
cagaggcaaggcaggtgtagtaaatttgtaaaactcttatagctacagtccctataacttgcctatcgacgacattaaatttacaaaatactacttgtca |
231 |
Q |
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| T |
45209401 |
cagaggcaaggcaggtgtagtaaatttgtaaaactcttatagctacagt-cctataacttgcctatcgacgacattaaatttacaaaatactacttgtca |
45209303 |
T |
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| Q |
232 |
tgatatgatatatgttctcttcatcatc |
259 |
Q |
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| T |
45209302 |
tgatatgatatatgctctcttcatcatc |
45209275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 45208324 - 45208245
Alignment:
| Q |
370 |
ttagacggttcatgcagagaagatatatattattgttactgtcacttctc-aattgggaaa-ttaatcataacagcaagt |
447 |
Q |
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| T |
45208324 |
ttagacggttcatgcagagaagatatatattattgttactgtcacttctcaaattgggaaatttaatcataacagcaagt |
45208245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 42084164 - 42084114
Alignment:
| Q |
398 |
attattgttactgtcacttctcaattgggaaa-ttaatcataacagcaagt |
447 |
Q |
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| T |
42084164 |
attattgttaatgtcacttctcaattgggaaatttaatcataacagcaagt |
42084114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27749522 - 27749480
Alignment:
| Q |
7 |
tcgaagaatatattcatgatcacccaaaaatgtattcatgaaa |
49 |
Q |
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| T |
27749522 |
tcgaaaaatatctttatgatcacccaaaaatgtattcatgaaa |
27749480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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