View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_high_23 (Length: 308)
Name: NF18766_high_23
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 27065691 - 27065395
Alignment:
| Q |
1 |
tgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaat |
100 |
Q |
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| T |
27065691 |
tgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaat |
27065592 |
T |
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| Q |
101 |
ggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcgg |
200 |
Q |
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| T |
27065591 |
ggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcgg |
27065492 |
T |
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| Q |
201 |
atctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgcattcat |
297 |
Q |
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| T |
27065491 |
atctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctccacccatggtgcattcat |
27065395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 27079408 - 27079112
Alignment:
| Q |
1 |
tgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaat |
100 |
Q |
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| T |
27079408 |
tgcaacttcagttttgggccatgatgtaactgttcgatcaactgagagtgtaaatggatcgggcaaaaatgtcatggttggaagggttaaagggatcaat |
27079309 |
T |
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| Q |
101 |
ggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcgg |
200 |
Q |
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| T |
27079308 |
gggggtaaagttactgaatctgtgtcatgtcaccaaagtttgtttccttatttgctatactattgccactcggttccaaaggttcgtgtttatgaagcag |
27079209 |
T |
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| Q |
201 |
atctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgcattcat |
297 |
Q |
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| T |
27079208 |
atcttttagatcctgagtctaaggtgaagataaatcatggtgttgctatttgtcacttagatacaactgcttggagcccaacacacggtgcattcat |
27079112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 27053249 - 27052953
Alignment:
| Q |
1 |
tgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaat |
100 |
Q |
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|||||||||| |||||||| || ||| || ||||| ||||||||||||||||||||| || ||| |||| ||||| ||| |||| |||| ||||||| |
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| T |
27053249 |
tgcaacttctattttgggtagcaatgtgacggttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaat |
27053150 |
T |
|
| Q |
101 |
ggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcgg |
200 |
Q |
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| T |
27053149 |
ggtgggaacgttatggagtcagtgtcttgtcatcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaatttatgaagcga |
27053050 |
T |
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| Q |
201 |
atctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgcattcat |
297 |
Q |
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|||| ||||| || ||||||| ||||| |||||||||||||| || || ||||| ||||||||||||||||| | || |||||||||||||| |
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| T |
27053049 |
atcttttggaccctaagtctaaggtgaagataaatcatggtgttgcgatctgtcacttggatacaactgcttggagtcccactcatggtgcattcat |
27052953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 14866387 - 14866523
Alignment:
| Q |
41 |
actgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtt |
140 |
Q |
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|||||||||||||||||| || |||||||| ||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| || ||||||| |
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| T |
14866387 |
actgagaatgtaaatgggtcgaagaaggatgttatggtgggtcgggttaatgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtt |
14866486 |
T |
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| Q |
141 |
tgtttccttatttgttatactactgtcactcggttcc |
177 |
Q |
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| T |
14866487 |
tgtttccgtatttgctttattattgtcactcggttcc |
14866523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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