View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_high_25 (Length: 295)

Name: NF18766_high_25
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_high_25
NF18766_high_25
[»] chr5 (2 HSPs)
chr5 (1-291)||(42262221-42262511)
chr5 (158-218)||(42783254-42783314)
[»] chr4 (2 HSPs)
chr4 (147-212)||(42449809-42449874)
chr4 (4-64)||(42449663-42449723)
[»] chr2 (1 HSPs)
chr2 (146-196)||(7488773-7488823)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 42262221 - 42262511
Alignment:
Q  1 ttgtcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42262221 ttgtcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgc 42262320  T
Q  101 tgttaaatggcaccattactttgatatcaagttatcgaggggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42262321 tgttaaatggcaccattactttgatatcaagttatcgagaggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaa 42262420  T
Q  201 tctctttattgtggggccatttcacgagcagtttggatcgtcctttccnnnnnnngtgtcgcccataggacttggtaagaagaataatata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  42262421 tctctttattgtggggccatttcacgagcagtttggatcgtcctttcctttttttgtgtcgcccataggacttggtaagaagaataatata 42262511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 42783254 - 42783314
Alignment:
Q  158 tatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggcc 218  Q
    |||||||||||||| ||||  |||| | |||||||||||| || ||||||||||| |||||    
T  42783254 tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc 42783314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 42449809 - 42449874
Alignment:
Q  147 tacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgt 212  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  42449809 tacttttcgcatatcaattttgggtaaacttggtgcgagagaatcttggatcaatctctttattgt 42449874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 42449663 - 42449723
Alignment:
Q  4 tcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggta 64  Q
    ||||||||||||||||| |||| |||| ||| ||| ||||  |||||||||||||||||||    
T  42449663 tcatttgactttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggta 42449723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 7488823 - 7488773
Alignment:
Q  146 ctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatgga 196  Q
    ||||||||| | |||||||||||||| || ||||||||| |||||||||||    
T  7488823 ctacttttcacatatcaattttgggtgaaattggtgtgaaagaatcatgga 7488773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University