View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_high_33 (Length: 242)
Name: NF18766_high_33
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 51311125 - 51311292
Alignment:
| Q |
53 |
agggaagtcaatattttcttctttttggagaataaaaaggagggaggggacttt-----gcagatgaaagttcgaactgctcttttcgtatccactatcc |
147 |
Q |
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| T |
51311125 |
agggaagtcaatcttttcttctttttggagaataaaaaggagggaggggactttaatttgcagatgaaagttcgaactgctctttgcgtatccactatcc |
51311224 |
T |
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| Q |
148 |
cattatccaaggaggagtgggtaaaggacaggtgatgtaatgtaacatgctctcaatcgttggaagatg |
216 |
Q |
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||||||||||||||||||||||||| | ||| | || |||||||||||||||||||||||||||||| |
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| T |
51311225 |
cattatccaaggaggagtgggtaaa-taaaggacaggtgatgtaacatgctctcaatcgttggaagatg |
51311292 |
T |
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