View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_high_39 (Length: 213)
Name: NF18766_high_39
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 43976049 - 43976141
Alignment:
| Q |
79 |
ccaactgtaggctaaaacaaactgccgtgcagttgggctatttgtacaccgcaccacaatccgggcagctgcaccaaaaaacacctacctaga |
171 |
Q |
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| T |
43976049 |
ccaactgtaggctaaaacaaactgccgtgcagttgggctatttgtacaccgcaccacaatccgggcagctgcaccaaaaaacacctacctaga |
43976141 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 43976151 - 43976185
Alignment:
| Q |
166 |
cctagaattccaacaccattcgaagaacataaaag |
200 |
Q |
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| T |
43976151 |
cctagaattccaacaccatttgaagaacataaaag |
43976185 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 31647047 - 31647083
Alignment:
| Q |
58 |
aaaaaccagcaacaaattaaaccaactgtaggctaaa |
94 |
Q |
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| T |
31647047 |
aaaaaccagcaacaaactaaaccaactgaaggctaaa |
31647083 |
T |
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