View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_low_10 (Length: 544)

Name: NF18766_low_10
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_low_10
NF18766_low_10
[»] chr8 (10 HSPs)
chr8 (1-485)||(5874782-5875266)
chr8 (45-143)||(5873172-5873270)
chr8 (476-528)||(5873634-5873686)
chr8 (37-108)||(35885335-35885406)
chr8 (36-108)||(39656892-39656964)
chr8 (38-104)||(788026-788092)
chr8 (67-125)||(27322548-27322606)
chr8 (37-117)||(1488455-1488535)
chr8 (37-114)||(510452-510529)
chr8 (36-105)||(35886091-35886160)
[»] chr4 (15 HSPs)
chr4 (36-104)||(35428141-35428209)
chr4 (67-189)||(32449346-32449468)
chr4 (38-108)||(24471830-24471900)
chr4 (68-189)||(31910584-31910705)
chr4 (38-143)||(17979057-17979162)
chr4 (36-104)||(5825332-5825400)
chr4 (38-126)||(38320420-38320508)
chr4 (42-108)||(38321280-38321346)
chr4 (37-105)||(24472588-24472656)
chr4 (38-142)||(32894644-32894748)
chr4 (38-108)||(17978263-17978333)
chr4 (38-108)||(37142690-37142760)
chr4 (33-142)||(49346101-49346211)
chr4 (36-126)||(49708685-49708775)
chr4 (37-132)||(55879793-55879889)
[»] chr1 (14 HSPs)
chr1 (39-107)||(4124701-4124769)
chr1 (38-104)||(51977180-51977246)
chr1 (38-96)||(4125407-4125465)
chr1 (37-143)||(51610164-51610270)
chr1 (37-142)||(51129372-51129477)
chr1 (80-143)||(29152292-29152355)
chr1 (37-107)||(11032198-11032268)
chr1 (39-107)||(49961460-49961528)
chr1 (37-88)||(15374695-15374746)
chr1 (67-142)||(49420113-49420188)
chr1 (37-96)||(49959953-49960012)
chr1 (38-84)||(3788435-3788481)
chr1 (37-107)||(11426852-11426922)
chr1 (38-107)||(11031431-11031500)
[»] chr6 (4 HSPs)
chr6 (36-167)||(3802729-3802860)
chr6 (37-176)||(3802063-3802201)
chr6 (38-142)||(1528561-1528665)
chr6 (40-125)||(1529372-1529457)
[»] chr7 (14 HSPs)
chr7 (68-189)||(29006377-29006499)
chr7 (68-188)||(29007095-29007217)
chr7 (46-108)||(34996885-34996947)
chr7 (38-86)||(25530377-25530423)
chr7 (37-143)||(34367361-34367466)
chr7 (63-153)||(34997674-34997764)
chr7 (68-144)||(23632953-23633028)
chr7 (37-88)||(9378728-9378779)
chr7 (38-108)||(3820394-3820464)
chr7 (38-88)||(9379793-9379843)
chr7 (37-142)||(38315783-38315888)
chr7 (37-142)||(41712964-41713069)
chr7 (77-153)||(12924148-12924224)
chr7 (52-104)||(42607095-42607147)
[»] chr5 (10 HSPs)
chr5 (38-107)||(1282946-1283015)
chr5 (38-96)||(1282254-1282312)
chr5 (36-143)||(39949490-39949597)
chr5 (38-75)||(42310849-42310886)
chr5 (77-144)||(6903210-6903277)
chr5 (37-108)||(39950311-39950382)
chr5 (67-104)||(4789549-4789586)
chr5 (38-114)||(30003538-30003614)
chr5 (68-132)||(39149423-39149487)
chr5 (38-142)||(41784622-41784726)
[»] chr2 (11 HSPs)
chr2 (38-153)||(5505153-5505268)
chr2 (38-104)||(5504344-5504410)
chr2 (38-143)||(2992798-2992903)
chr2 (67-142)||(30545379-30545454)
chr2 (38-75)||(42946480-42946517)
chr2 (38-114)||(6197915-6197991)
chr2 (38-142)||(17947880-17947984)
chr2 (38-108)||(2992002-2992072)
chr2 (38-84)||(26021913-26021959)
chr2 (77-142)||(8146599-8146664)
chr2 (67-107)||(34617682-34617722)
[»] chr3 (7 HSPs)
chr3 (36-88)||(42146798-42146849)
chr3 (38-88)||(42147546-42147596)
chr3 (38-84)||(50306525-50306571)
chr3 (37-86)||(7359842-7359891)
chr3 (38-142)||(1128170-1128274)
chr3 (38-86)||(23379332-23379380)
chr3 (43-87)||(53393212-53393256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (38-88)||(67247-67297)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 5875266 - 5874782
Alignment:
Q  1 gaaataaataaataacattgagagcgctaatgaagtaggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccatt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5875266 gaaataaataaataacattgggagcgctaatgaagtaggtggcatttagggtgggaatggggaagagttttccactatgggaaagttgttcttgaccatt 5875167  T
Q  101 agattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttcaccattttcttcaacctccatcacaaacgatacca 200  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  5875166 aaattaaaaaggaatacagattttatgatggtatgtccacacttgatttttttactttctctttcaccattttcttcaacctccatcacaaacgatgcca 5875067  T
Q  201 cccactcaccaccaccagcaactacaacaacaatcatgctccatgaaattaaactaaaaataatgcgattaagaaaattcaaaccccacaaactaataat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  5875066 cccactcaccaccaccagcaactacaacaacaatcatgctccatgaaattaaactaaaaataatgtgattaagcaaattcaaaccccacaaactaataat 5874967  T
Q  301 aatgtgattaagctaataataacgaaattaagccatatatattgtataaacaaaacttaaattgatcgttatgaacataagtattaagattcagagcacg 400  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5874966 aatgtaattaagctaataataacgaaattaagccatatgtattgtataaacaaaacttaaattgatcgttatgaacataagtattaagattcagagcacg 5874867  T
Q  401 aattgaagaatcatcgatgaacacggtgattcaaagcagatcaataagaaagatgaagaagttgaaaacataaaatataaaatat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5874866 aattgaagaatcatcgatgaacacggtgattcaaagcagatcaataagaaagatgaagaagttgaaaacagaaaatataaaatat 5874782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 5873172 - 5873270
Alignment:
Q  45 tttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacact 143  Q
    ||||||||||||||| | |||||||||| |||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  5873172 tttagggtgggaatgagaaagagtttccaactatgggaaagtatttcttgaccattagattaaaaaggaacacatattttatgatggtctgtccacact 5873270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 5873686 - 5873634
Alignment:
Q  476 tataaaatatttattgacggcaacgtcgtttgcgacggaaagggggaatttgt 528  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5873686 tataaaatatttattgacggcaacgtcgtttgcggcggaaagggggaatttgt 5873634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 35885335 - 35885406
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    ||||||||||||||||||||||||  ||||||||||||| || | |||||  || |||||||||||||||||    
T  35885335 aggtggcatttagggtgggaatggaaaagagtttcccaccatagaaaagtctttattgaccattagattaaa 35885406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 39656964 - 39656892
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||||||||| | ||| |||||||||| ||||| |||||||| || || |||| |||||||||    
T  39656964 taggtggcatttagggtgggtaggggaaagagtttcctactataggaaagtttttttttaccaatagattaaa 39656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 788026 - 788092
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    |||||||||||||||||||||||| || |||||||||| || | |||||| ||  ||||||||||||    
T  788026 ggtggcatttagggtgggaatgggaaaaagtttcccaccatagcaaagttttttctgaccattagat 788092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 27322606 - 27322548
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagatttta 125  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| |||  |||||||||||    
T  27322606 gtttcccacgatgggaaagttattcttgaccattaaattaaagaggtgtacagatttta 27322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 1488535 - 1488455
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatac 117  Q
    |||||||||||||| |||||| ||| |||||||| |||| || ||||||||| | | ||||||| ||| ||| ||||||||    
T  1488535 aggtggcatttaggatgggaaggggaaagagttttccaccataggaaagttgatttggaccattggatcaaataggaatac 1488455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 510452 - 510529
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 114  Q
    ||||||||||||| ||||| | ||| |||| || |||| ||||||||||| ||| || ||||||| |||||| |||||    
T  510452 aggtggcatttagagtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaa 510529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 35886160 - 35886091
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagatt 105  Q
    ||||||||||||||||| ||||| || |||||||||||||  |  |||| | ||| ||||||||||||||    
T  35886160 taggtggcatttagggtaggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatt 35886091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 35428209 - 35428141
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  35428209 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcatgaccatcagat 35428141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 32449346 - 32449468
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 166  Q
    ||||||||| |||| ||| |  || ||||| ||||||||||| ||||||||  ||||||| ||||| | ||||||||  ||| |||  ||||||||||||    
T  32449346 gtttcccaccatggaaaaatattttttgacaattagattaaagaggaataccaattttatcatggtctatccacactatattttttctctttctctttca 32449445  T
Q  167 ccattttcttcaacctccatcac 189  Q
    |||||||||||||||||||||||    
T  32449446 ccattttcttcaacctccatcac 32449468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 24471830 - 24471900
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  || |||||||||||||||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagtctttattgaccattagattaaa 24471900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 31910584 - 31910705
Alignment:
Q  68 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 166  Q
    |||||||| ||||||||||| ||| || ||||||| |||||| |||| ||   ||||||| ||||| | || |||||  ||| |||  ||||||||||||    
T  31910584 tttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtctatc-acactatattttttctctttctctttca 31910682  T
Q  167 ccattttcttcaacctccatcac 189  Q
    |||||||||||||||||||||||    
T  31910683 ccattttcttcaacctccatcac 31910705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 17979162 - 17979057
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||     
T  17979162 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttgtg 17979063  T
Q  138 cacact 143  Q
    ||||||    
T  17979062 cacact 17979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 5825332 - 5825400
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    |||||||||||||||||||||||||| ||||||||||||| || | |||||| ||  | ||||||||||    
T  5825332 taggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagttttttctaaccattagat 5825400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 38320420 - 38320508
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttat 126  Q
    ||||||||||||||||||||  || ||||||||||||| | ||||||||  || |||||||||| |||| | |||| ||| ||||||||    
T  38320420 ggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagtgttttttgaccattaaattagagaggagtaccgattttat 38320508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 38321346 - 38321280
Alignment:
Q  42 gcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||||| ||  |||||||||||| ||| |||||||  || |||||||||||||||||    
T  38321346 gcatttagggtgggaagggaaaagagtttcccattataggaaagtgatttttgaccattagattaaa 38321280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 24472656 - 24472588
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagatt 105  Q
    |||||||||||||||||||||| || |||||||||||||  |  |||| | ||| ||||||||||||||    
T  24472656 aggtggcatttagggtgggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatt 24472588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 32894748 - 32894644
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||| ||||   ||| |||||||||| ||||||||| |||| || || ||||| |||||||| |||   ||||||||||  ||||| ||||    
T  32894748 ggtggcatttaggatgggtgagggaaagagtttcctactatgggagagtttttttttaccataagattaaagaggtgcacagattttaaaatggtctgtc 32894649  T
Q  138 cacac 142  Q
    |||||    
T  32894648 cacac 32894644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 17978263 - 17978333
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  17978263 ggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 17978333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 37142760 - 37142690
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  37142760 ggtggcatttagggtgggtgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 37142690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 49346101 - 49346211
Alignment:
Q  33 aagtaggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg-ttcttgaccattagattaaaaaggaatacagattttatgatgg 131  Q
    |||||||||||||||||||||||   ||| |||| ||| |||  |||||||||||| || || ||||||||||||||  |||  || |||||||| ||||    
T  49346101 aagtaggtggcatttagggtgggtgagggaaagaattttccatcatgggaaagttgattgtttaccattagattaaattggagcactgattttatcatgg 49346200  T
Q  132 tttgtccacac 142  Q
    | | |||||||    
T  49346201 tctatccacac 49346211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 49708775 - 49708685
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttat 126  Q
    ||||||||||||||||||||   ||| |||| |||||||| |||| ||||| | |  || ||||||||||||| ||||| | |||||||||    
T  49708775 taggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagattatgcccattagattaaagaggaacatagattttat 49708685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 55879793 - 55879889
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg-ttcttgaccattagattaaaaaggaatacagattttatgatggt 132  Q
    |||||||||||||||||||   ||| || | |||||||| |||||||||||| || || ||| ||||||||||  ||| ||| |||||||| |||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttgtttgtttaccgttagattaaagtggagtactgattttatcatggt 55879889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4124701 - 4124769
Alignment:
Q  39 gtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaa 4124769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 51977246 - 51977180
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||| ||||    
T  51977246 ggtggcatttagggtggaaatgggaaagagttttccactatgggaaagttgttcatgaccatcagat 51977180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 4125465 - 4125407
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 96  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||    
T  4125465 ggtggcatttagggtgggaatgggaaagagtttcccactataggaaagttaatcttgac 4125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 51610270 - 51610164
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    ||||||||||||||||||| | | |||| | |||||||| ||||||||||| || |  |||| ||||||| | |||||||| |||||||| |||| ||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtttttttataccactagattagagaggaatactgattttatcatgggttgt 51610171  T
Q  137 ccacact 143  Q
     ||||||    
T  51610170 gcacact 51610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 51129372 - 51129477
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | |    
T  51129372 aggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctct 51129471  T
Q  137 ccacac 142  Q
    ||||||    
T  51129472 ccacac 51129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 29152355 - 29152292
Alignment:
Q  80 ggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacact 143  Q
    |||||||| ||  |||||||| ||||||| |||| || ||||||||||||||||||||||||||    
T  29152355 ggaaagttttttatgaccattggattaaataggattatagattttatgatggtttgtccacact 29152292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 11032268 - 11032198
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    ||||||||||||   |||||| |||||| |||||||||| ||||||||||||   ||||||||||||||||    
T  11032268 aggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaa 11032198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 49961528 - 49961460
Alignment:
Q  39 gtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    ||||||||||||||||||||||  |||||||| | ||||||| |||||| ||  |||| ||||||||||    
T  49961528 gtggcatttagggtgggaatggaaaagagttttctactatggaaaagttttttctgacaattagattaa 49961460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 15374746 - 15374695
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 15374695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 49420113 - 49420188
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 142  Q
    ||||||||  ||||||||| | || ||||||||||||||||| |||   ||| ||||||||||||| |||||||||    
T  49420113 gtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttatgatggtctgtccacac 49420188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 49959953 - 49960012
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 96  Q
    |||||||||||||||||| |||| | |||||||||| ||||| ||||||||  |||||||    
T  49959953 aggtggcatttagggtggaaatgagaaagagtttcctactataggaaagttaatcttgac 49960012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 84  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 11426852 - 11426922
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    |||||||||||||  ||| || ||| ||||||||||||| ||||||||| |  | ||||||||||||||||    
T  11426852 aggtggcatttagcatggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaa 11426922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 11031431 - 11031500
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    |||||||||||   |||||| |||||| |||||||||| |||||||||||    ||||||||||||||||    
T  11031431 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagattaa 11031500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 3802860 - 3802729
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttg 135  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| || || |  ||||||| |||| ||||||| || |||||||| ||||| |     
T  3802860 taggtggcatttagggtgggaatgggaaagaatttctcactatgggaaacttattttataccattaaattagaaaggaacactgattttatcatggtctt 3802761  T
Q  136 tccacacttgattattttgctttctctttcac 167  Q
    ||||||||  ||| | || |||||||||||||    
T  3802760 tccacactatattttcttcctttctctttcac 3802729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 3802063 - 3802201
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||| |  | ||||||||||| |||||| |   ||||||| ||||| | |    
T  3802063 aggtggcatttagggtgggaacgggaaagagtttcacactatggaaaagttgttttacatcattagattaagaaggaacattaattttatcatggtcttt 3802162  T
Q  137 ccacacttgattattttgctttctctttcaccattttctt 176  Q
    | |||||  ||| |||| |||||||||||| |||||||||    
T  3802163 ctacactatatttttttcctttctctttca-cattttctt 3802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 1528561 - 1528665
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||   ||| ||||||||||||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctatc 1528660  T
Q  138 cacac 142  Q
    |||||    
T  1528661 cacac 1528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 1529457 - 1529372
Alignment:
Q  40 tggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagatttta 125  Q
    ||||||||||||||||   ||| ||||||||||||| ||| ||||||| ||  ||||||| |||||||| |||   ||||||||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttcccaccatgagaaagttttttctgaccataagattaaataggtgcacagatttta 1529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 29006377 - 29006499
Alignment:
Q  68 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 166  Q
    |||||||| ||||||||||| ||| || |||||||||||||| |||| |||  ||||||| ||||| | ||||||||  ||| |||  ||||||||||||    
T  29006377 tttcccaccatgggaaagttagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttca 29006476  T
Q  167 ccattttcttcaacctccatcac 189  Q
    |||| ||||||||||||||||||    
T  29006477 ccatcttcttcaacctccatcac 29006499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 29007217 - 29007095
Alignment:
Q  68 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttg-ctttctctttc 165  Q
    |||||||| ||||||||||| ||| || |||||||||||||| |||| |||  ||||||| ||||| | ||||||||  ||| ||||  |||||||||||    
T  29007217 tttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctatccacactatatttttttctctttctctttc 29007118  T
Q  166 accattttcttcaacctccatca 188  Q
    |||||||||||||||||||||||    
T  29007117 accattttcttcaacctccatca 29007095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 34996885 - 34996947
Alignment:
Q  46 ttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||| | ||||||||||||||||||||||||  || |||| ||||||||||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagtgatttttgatcattagattaaa 34996947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 25530423 - 25530377
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 86  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25530423 ggtggcatttagggtgggaatggg--agagtttcccactatgggaaagt 25530377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 34367361 - 34367466
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    |||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||    
T  34367361 aggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtt-ttttataccattagattagagaggagtactgattttatcatgggttgt 34367459  T
Q  137 ccacact 143  Q
     ||||||    
T  34367460 gcacact 34367466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 34997764 - 34997674
Alignment:
Q  63 aagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattatttt 153  Q
    |||||||||||||||| |||||||  || ||||||||||||||| | |||| ||  |||||||| |||| |||| ||||||  ||||||||    
T  34997764 aagagtttcccactataggaaagtgttttttgaccattagattagagaggagtatcgattttatcatgggttgtgcacactatattatttt 34997674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 23632953 - 23633028
Alignment:
Q  68 tttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacactt 144  Q
    |||||||| |||| |||||| || || |||||||||||||| |||| || ||||||||||||||| || ||||||||    
T  23632953 tttcccaccatggaaaagtttttttt-accattagattaaagaggagtatagattttatgatggtctgcccacactt 23633028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 9378728 - 9378779
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    ||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttg 9378779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 3820394 - 3820464
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||||||| | | | |||||||||| ||||| |||||||| || || |||| |||||||||    
T  3820394 ggtggcatttagggtgggtaggtgaaagagtttcctactataggaaagtttttttttaccaatagattaaa 3820464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 9379843 - 9379793
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    |||||||||||||||||||  ||| |||| ||| |||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttg 9379793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 38315783 - 38315888
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    |||||||||||||||||||   ||| |||||||||| ||||||| |||||| ||  | ||||| |||||||| | |   ||||||||||  ||||| |||    
T  38315783 aggtggcatttagggtgggtgagggaaagagtttcctactatggaaaagttttttcttaccataagattaaagaagtgcacagattttaaaatggtctgt 38315882  T
Q  137 ccacac 142  Q
    ||||||    
T  38315883 ccacac 38315888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 41712964 - 41713069
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 136  Q
    |||||||||||||||||||   | | ||||||||| ||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | |    
T  41712964 aggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctct 41713063  T
Q  137 ccacac 142  Q
    ||||||    
T  41713064 ccacac 41713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 12924224 - 12924148
Alignment:
Q  77 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattatttt 153  Q
    ||||||||||| || || ||||||| |||||| |||| || ||||||||||||||| || |||| ||| || |||||    
T  12924224 atgggaaagtttttttttaccattaaattaaagaggagtatagattttatgatggtctgcccacgctttataatttt 12924148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 42607095 - 42607147
Alignment:
Q  52 tgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    |||||| ||||||  ||||||||| |||||||||||||| ||| |||||||||    
T  42607095 tgggaaaggggaattgtttcccaccatgggaaagttgtttttgtccattagat 42607147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 1283015 - 1282946
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaa 1282946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 1282254 - 1282312
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 96  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  1282254 ggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttaatcttgac 1282312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 39949490 - 39949597
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttg 135  Q
    ||||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| |||    
T  39949490 taggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttg 39949589  T
Q  136 tccacact 143  Q
    | ||||||    
T  39949590 tgcacact 39949597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 42310849 - 42310886
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccac 75  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccac 42310886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 6903277 - 6903210
Alignment:
Q  77 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacactt 144  Q
    ||||||||||| || || | |||||||||||| |||| || ||||||||||||||| || ||||||||    
T  6903277 atgggaaagtttttttttatcattagattaaagaggagtatagattttatgatggtctgcccacactt 6903210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 39950382 - 39950311
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    |||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  39950382 aggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 39950311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 4789549 - 4789586
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagat 104  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  4789549 gtttcccaccatgggaaagttattcttgaccattagat 4789586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 30003614 - 30003538
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 114  Q
    |||||||||||||||||| | ||| |||||||||| || ||   ||||||| | ||||||||||||| ||| |||||    
T  30003614 ggtggcatttagggtgggtaagggaaagagtttcctaccataaaaaagttgattttgaccattagatcaaataggaa 30003538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 39149487 - 39149423
Alignment:
Q  68 tttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggt 132  Q
    |||||||| ||||||||||| || || |||||||||||| | | ||| | |||||||||||||||    
T  39149487 tttcccaccatgggaaagtttttttttaccattagattagagatgaacatagattttatgatggt 39149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 41784622 - 41784726
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||   ||| |||||||| | |||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  41784622 ggtggcatttagggtgggtgagggaaagagttttctactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctctc 41784721  T
Q  138 cacac 142  Q
    |||||    
T  41784722 cacac 41784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 5505268 - 5505153
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||||  || |||||||| |||| ||||||||||  || ||||||||||||||| | |||| ||| ||||| || |||| ||||     
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagtgttttttgaccattagattagagaggagtaccgatttcatcatgggttgtg 5505169  T
Q  138 cacacttgattatttt 153  Q
    ||||||  ||||||||    
T  5505168 cacactatattatttt 5505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 5504344 - 5504410
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 104  Q
    |||||||||||||||||||| ||| |||||||||||||||| | |||||  || |||||||||||||    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaagtgatttttgaccattagat 5504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 2992903 - 2992798
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||     
T  2992903 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttgtg 2992804  T
Q  138 cacact 143  Q
    ||||||    
T  2992803 cacact 2992798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 30545454 - 30545379
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 142  Q
    ||||||||  ||||||||||| || || |||||||||||||| |||   ||| |||||||||||||||||||||||    
T  30545454 gtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacac 30545379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 42946517 - 42946480
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccac 75  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccac 42946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 6197915 - 6197991
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 114  Q
    |||||||||||||||||| | ||| |||| || |||| ||||||||||| ||| || ||||||| |||||| |||||    
T  6197915 ggtggcatttagggtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaa 6197991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 17947984 - 17947880
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||| ||||   ||| |||||||||||||||||||| |||| || || ||||| |||||||| |||   | ||||||||  ||||| ||||    
T  17947984 ggtggcatttaggatgggtgagggaaagagtttcccactatgggagagtttttttttaccataagattaaagaggtgcatagattttaaaatggtctgtc 17947885  T
Q  138 cacac 142  Q
    |||||    
T  17947884 cacac 17947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 2992002 - 2992072
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 108  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  2992002 ggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 2992072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 84  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 8146664 - 8146599
Alignment:
Q  77 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 142  Q
    ||||||||||| || || |||||||||||||| |||   | | |||||||||||||||||||||||    
T  8146664 atgggaaagttttttttaaccattagattaaagaggtgcatacattttatgatggtttgtccacac 8146599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 34617682 - 34617722
Alignment:
Q  67 gtttcccactatgggaaagttgttcttgaccattagattaa 107  Q
    ||||||||| ||||||||||| || ||||||||||||||||    
T  34617682 gtttcccaccatgggaaagttatttttgaccattagattaa 34617722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 42146798 - 42146849
Alignment:
Q  36 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  42146798 taggtggcatttagggtggg-atgggaaagattttcccaccatgggaaagttg 42146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 42147596 - 42147546
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 42147546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 84  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 7359891 - 7359842
Alignment:
Q  37 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 86  Q
    ||||||||||||||||||| | | |||||| |||||||| ||||||||||    
T  7359891 aggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 1128274 - 1128170
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 137  Q
    ||||||||||||||||||   | | ||||||||| ||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  1128274 ggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctctc 1128175  T
Q  138 cacac 142  Q
    |||||    
T  1128174 cacac 1128170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 23379332 - 23379380
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 86  Q
    |||||||||||||||||| | ||| |||| ||||||||||| |||||||    
T  23379332 ggtggcatttagggtgggtaagggaaagattttcccactataggaaagt 23379380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 53393256 - 53393212
Alignment:
Q  43 catttagggtgggaatggggaagagtttcccactatgggaaagtt 87  Q
    |||||||  |||||| || ||||||||||||||||||||||||||    
T  53393256 catttagcatgggaaaggagaagagtttcccactatgggaaagtt 53393212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 67247 - 67297
Alignment:
Q  38 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 88  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 67297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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