View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_low_12 (Length: 538)

Name: NF18766_low_12
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_low_12
NF18766_low_12
[»] chr4 (2 HSPs)
chr4 (13-535)||(106483-107004)
chr4 (87-215)||(166927-167055)
[»] scaffold0013 (1 HSPs)
scaffold0013 (91-221)||(88553-88683)
[»] chr7 (1 HSPs)
chr7 (71-239)||(13055199-13055367)
[»] chr8 (10 HSPs)
chr8 (79-207)||(5656620-5656748)
chr8 (81-207)||(5718237-5718363)
chr8 (81-207)||(5686090-5686216)
chr8 (102-216)||(5638186-5638300)
chr8 (102-216)||(5651384-5651498)
chr8 (102-182)||(5602090-5602170)
chr8 (102-182)||(5602676-5602756)
chr8 (102-182)||(5602938-5603018)
chr8 (102-182)||(5632352-5632432)
chr8 (102-182)||(5638450-5638530)
[»] chr3 (1 HSPs)
chr3 (141-205)||(12134959-12135023)


Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 107004 - 106483
Alignment:
Q  13 acttatttggttttattttactgattttgtcatcttt--gtactcatagcttatagcttattttccagttaaactgcagtggaaggcaatggaacccgtc 110  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107004 acttatttggttttattttactgattttgtcatctttttgtactcatagcttatagcttattttccagttaaactgcagtggaaggcaatggaacccgtc 106905  T
Q  111 tacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttcctgccataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106904 tacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttcctgccataa 106805  T
Q  211 ataaaacaaaacaaaaattaataataggtctttattaattttatagatggtaagtgtgaagtttgagttttgaaacaaataaaatgttttaaggttttga 310  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106804 ataaaacaaaacaaaaattaataataggtctttattagttttatagatggtaagtgtgaagtttgagttttgaaacaaataaaatgttttaaggttttga 106705  T
Q  311 tggaaatgtggtgtcttgatccgttgatggtggtcctggttatatgtaacaagaaactagatgctagatagtaaagaactaacaagaagtagaattaaca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  106704 tggaaatgtggtgtcttgatccgttgatggtggtcctggttatatgttacaagaaactagatgctagatagtaaagaactaacaagaagtagaattaaaa 106605  T
Q  411 ttgcaaagttacaattaatgaatgagtaactgcactaagcatgataagataactcctatcagaaccagtaaaaagaataaattcaataaaggatgactaa 510  Q
    ||||||||||||    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106604 ttgcaaagttac----aatgaatgagtgactgcactaggcatgataagataactcctatcagaaccagtaaaaagaataaattcaataaaggatgactaa 106509  T
Q  511 aaccaag-aaacaatcattggacatt 535  Q
    ||||||| ||||||||||||||||||    
T  106508 aaccaagaaaacaatcattggacatt 106483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 167055 - 166927
Alignment:
Q  87 cagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 186  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  167055 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 166956  T
Q  187 tactcctgtgatttcctgccataaataaa 215  Q
    | |||||| ||| |||||| |||||||||    
T  166955 tgctcctgagatatcctgcaataaataaa 166927  T

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Target: scaffold0013 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 88553 - 88683
Alignment:
Q  91 ggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatact 190  Q
    |||||||||||||||||||||||||||||| || ||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  88553 ggaaggcaatggaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatact 88652  T
Q  191 cctgtgatttcctgccataaataaaacaaaa 221  Q
    ||||||| ||||||| |||||||||| ||||    
T  88653 cctgtgagttcctgcgataaataaaataaaa 88683  T

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Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 13055367 - 13055199
Alignment:
Q  71 ttttccagttaaactgcagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaaca 170  Q
    ||||| |||| |||| ||||||||| |||||||||   |||||||||||| |||| ||||||||| ||| ||||||||||||||||||  ||||||||||    
T  13055367 ttttcaagtttaactccagtggaagacaatggaacatatctacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaaca 13055268  T
Q  171 tacaatttttcatgaatactcctgtgatttcctgccataaataaaacaaaacaaaaattaataataggt 239  Q
    |||||||||| | |||||||||||||||| ||| | |||||||| |||| | |||||||||||||||||    
T  13055267 tacaatttttgaagaatactcctgtgattccctacaataaataagacaagagaaaaattaataataggt 13055199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 5656620 - 5656748
Alignment:
Q  79 ttaaactgcagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaattt 178  Q
    |||||||| || |||| ||||| |||  ||||||||||| || |||||||||||||  ||  | |||||||||||||| | |||||||| ||| || |||    
T  5656620 ttaaactgtagaggaaagcaatagaattcgtctacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgcagttt 5656719  T
Q  179 ttcatgaatactcctgtgatttcctgcca 207  Q
    |||||||||||||| |||| |||||||||    
T  5656720 ttcatgaatactcccgtgagttcctgcca 5656748  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 5718237 - 5718363
Alignment:
Q  81 aaactgcagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaattttt 180  Q
    |||||||| ||||||||||   || || | ||||||| || |||||||||||||  ||| | ||||||||| |||||| |||||||| ||| || |||||    
T  5718237 aaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagttttt 5718336  T
Q  181 catgaatactcctgtgatttcctgcca 207  Q
    |||||||||| |||||| |||||||||    
T  5718337 catgaatactgctgtgagttcctgcca 5718363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 5686090 - 5686216
Alignment:
Q  81 aaactgcagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaattttt 180  Q
    |||||||| ||||||||||   || || | ||||||| || |||||||||||||  ||| | ||||||||| |||| | |||||||| ||| || |||||    
T  5686090 aaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgcagttttt 5686189  T
Q  181 catgaatactcctgtgatttcctgcca 207  Q
    |||||||||| |||||| |||||||||    
T  5686190 catgaatactgctgtgagttcctgcca 5686216  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 5638186 - 5638300
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttc 201  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| |||||| | || | ||||| | |||    
T  5638186 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5638285  T
Q  202 ctgccataaataaaa 216  Q
    |||||| ||| ||||    
T  5638286 ctgccaaaaaaaaaa 5638300  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 5651384 - 5651498
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttc 201  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| |||||| | || | ||||| | |||    
T  5651384 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5651483  T
Q  202 ctgccataaataaaa 216  Q
    |||||| ||| ||||    
T  5651484 ctgccaaaaaaaaaa 5651498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 5602170 - 5602090
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca 182  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| ||||||    
T  5602170 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 5602756 - 5602676
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca 182  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| ||||||    
T  5602756 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 5603018 - 5602938
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca 182  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| ||||||    
T  5603018 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602938  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 5632352 - 5632432
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca 182  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| ||||||    
T  5632352 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5632432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 5638450 - 5638530
Alignment:
Q  102 gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca 182  Q
    |||||||| ||||||| || ||||||||| |||  ||  || |||||||||||||||| ||||||||||| ||| ||||||    
T  5638450 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5638530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 12134959 - 12135023
Alignment:
Q  141 aaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgatttcctgc 205  Q
    |||||| |||||||||||| |||||||||||||||||||||| || |  ||||||||||||||||    
T  12134959 aaatatttctatacattggataatgcaacatacaatttttcacgattgatcctgtgatttcctgc 12135023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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