View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_14 (Length: 500)
Name: NF18766_low_14
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 29797562 - 29797979
Alignment:
| Q |
15 |
acaagggacacacagacacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaaca |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797562 |
acaaaggacacacagacacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaaca |
29797661 |
T |
|
| Q |
115 |
cggagnnnnnnnnn--cctacttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttga |
212 |
Q |
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| T |
29797662 |
cagagagaaaaaaaaacctacttaaaaacggtgacaaggttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttga |
29797761 |
T |
|
| Q |
213 |
tggcattgggagagctaacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797762 |
tggcattgggagagctaacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagaa |
29797861 |
T |
|
| Q |
313 |
ggagggttggatgaagtgataacacttgcacatgcacttagttgtaatgcgttgcatg-ttattcccattgataactttgtctttgcaaggagtacaaca |
411 |
Q |
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| T |
29797862 |
ggagggttggatgaagtgataacacttgcacatgcacttagttgtaatgcgttgcatgtttattcccattgataactttgtctttgcaaggagtacaaca |
29797961 |
T |
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| Q |
412 |
accataatgcacaatgtt |
429 |
Q |
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| T |
29797962 |
accataatgcacaatgtt |
29797979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 49601093 - 49600714
Alignment:
| Q |
30 |
acacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacggagnnnnnnnnnc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||| || |
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| T |
49601093 |
acacagtgttgtaacacaccacaccaaactgagacataaccagaggaactttccctattgataagaagcaaaatagagtacaacacaga----------- |
49601005 |
T |
|
| Q |
130 |
ctacttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagcta |
229 |
Q |
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||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
49601004 |
------aaaaa--gtgacaaggttgatacttatgt--gtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagtta |
49600915 |
T |
|
| Q |
230 |
acaagtttcttaaggttaggatctttcaaatattggcaaagg-aaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaag |
328 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49600914 |
acaaatttcttaaggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaa |
49600815 |
T |
|
| Q |
329 |
tgataacacttgcacatgcacttagttgtaatgcgttgcatgttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgt |
428 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||| |
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| T |
49600814 |
tgatggcatttgcacatgcacttagttgtaatgcgttgcatgttatttccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgt |
49600715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 351
Target Start/End: Complemental strand, 4490064 - 4489973
Alignment:
| Q |
260 |
tattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataacacttgcacatgcactt |
351 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
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| T |
4490064 |
tattggcaaaggaaggctttcgctccttcagtttactgcaacaaattgcagaaggagggttggatgaagttatagcacttgcacatgcactt |
4489973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 4490107 - 4490066
Alignment:
| Q |
15 |
acaagggacacacagacacagtgttgtaacacaccacaccaa |
56 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4490107 |
acaagggacacacagacaaagtgttgtaacacaccacaccaa |
4490066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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