View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_16 (Length: 470)
Name: NF18766_low_16
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 52699304 - 52699745
Alignment:
| Q |
11 |
cagagaaggtcaaagttacaaaggtttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
110 |
Q |
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| T |
52699304 |
cagagaaggtcaaagttacaaagttttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
52699403 |
T |
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| Q |
111 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
210 |
Q |
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| T |
52699404 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
52699503 |
T |
|
| Q |
211 |
gtaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctc |
310 |
Q |
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| T |
52699504 |
gcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctc |
52699603 |
T |
|
| Q |
311 |
tttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaatgctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgct |
410 |
Q |
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| T |
52699604 |
tttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaaagctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgct |
52699703 |
T |
|
| Q |
411 |
gccagcagcagtctcatacttatacccttatatgagagattt |
452 |
Q |
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| T |
52699704 |
gccagcagcagtctcatacttatacccttatatgagagattt |
52699745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 139 - 358
Target Start/End: Original strand, 52722728 - 52722947
Alignment:
| Q |
139 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
238 |
Q |
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| T |
52722728 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52722827 |
T |
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| Q |
239 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
338 |
Q |
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| T |
52722828 |
acaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
52722927 |
T |
|
| Q |
339 |
agtcaagccaaaatcatgaa |
358 |
Q |
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|||||||||| |||||||| |
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| T |
52722928 |
agtcaagccagcatcatgaa |
52722947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 139 - 358
Target Start/End: Original strand, 52713706 - 52713925
Alignment:
| Q |
139 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
238 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| |
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| T |
52713706 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgac |
52713805 |
T |
|
| Q |
239 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
338 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||| || |
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| T |
52713806 |
acaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttcttttta |
52713905 |
T |
|
| Q |
339 |
agtcaagccaaaatcatgaa |
358 |
Q |
| |
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|||||||||| |||||||| |
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| T |
52713906 |
agtcaagccagcatcatgaa |
52713925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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