View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18766_low_18 (Length: 435)
Name: NF18766_low_18
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 24839358 - 24839768
Alignment:
| Q |
10 |
aagaatatagacataataataaggttataacgaccttacataattttgtccctcgcgacgacaccaaaggtcatgattcccaggaacatagaaaacatgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24839358 |
aagaatatagacataataataaggttataacgaccttacataattttgtccctcgcgacgacaccaaaggtcatgattcccaggaacatagaaaacatgt |
24839457 |
T |
|
| Q |
110 |
tcaaatctctctctcaaaagagacattgtaataaaaaacatgttatatgtttcagcaacatcaccagctacaagaaggacatcatccttataatccacag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24839458 |
tcaaatctctctctcaaaagagacattgtaataaaaaacatgttatatgtttcagcaacatcaccagccacaagaaggacatcatccttataatccacag |
24839557 |
T |
|
| Q |
210 |
atgacaaagactcaacccacttcaaattctcatcataatcagtatgcaaatcagaaaccacaaacacacgcaacccatcagtgtcctctaaagcagaaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24839558 |
atgacaaagactcaacccacttcaaattctcatcataatcagtatgcaaatcagaaaccacaaacacacgcaacccatcagtgtcctctaaagcagaaga |
24839657 |
T |
|
| Q |
310 |
cagtatttgttgtcttccaagattaaaccttttcattccataattgcagctaacagttacttgtttagagaaacatgaagattgatgattatgaggctgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24839658 |
cagtatttgttgtcttccaagattaaaccttttcattccataattgcagctaacagttacttgtttagagaaacatgaagattgatgattatgaggctgt |
24839757 |
T |
|
| Q |
410 |
tgtgacagtgt |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
24839758 |
tgtgacagtgt |
24839768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University