View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_20 (Length: 414)
Name: NF18766_low_20
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 31 - 399
Target Start/End: Original strand, 3660456 - 3660829
Alignment:
| Q |
31 |
aagacaaccaaaataaaacgttcatgaactcaccaattaa--agttattagaaaca---tgaggttaaaattgttaaataaaagtaattaaattcaatga |
125 |
Q |
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| T |
3660456 |
aagacaaccaaaataaaacgttcatgaactcaccaattaacgagttattagaaacaatatgaggttaaaattgttaaataaaagtaattaaattcaatga |
3660555 |
T |
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| Q |
126 |
ctttttccctcctctatgaaggagaaattagaaaatggattgtgacttataaatgaaaacaagtgtaaaaaagaattttttaaactcgacagaccaaacc |
225 |
Q |
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| T |
3660556 |
ctttttccctcctctatgaaggagaaattagaaaatggattgtgacttataaatgaaaacaagtgtaaaaaagagttttttaaactcgatagaccaaacc |
3660655 |
T |
|
| Q |
226 |
accctaccccattttacaccagattaggcagaaggaaaaactctttgagtttaaaatctcaaagagacgtgttaatccagccgaattgatataggtctaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
3660656 |
accctaccccattttacaccagattaggcagaaggaaaacctctttgagtttaaaatgtcaaagagacgtgttaatccagccgaattgatataggtccaa |
3660755 |
T |
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| Q |
326 |
tctttgtatcatcattagctaacatttaatcttctcttcaccacaattattctcatatcttcttattggtaagt |
399 |
Q |
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| T |
3660756 |
tctttgtatcatcattagctaacatttaatcttctctttaccacaattattctcatatcttcttattggtaagt |
3660829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 3660405 - 3660438
Alignment:
| Q |
13 |
aatatataacaagtcaacaagacaaccaaaataa |
46 |
Q |
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| T |
3660405 |
aatatataacaagtcaacaagacaaccaaaataa |
3660438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 20081956 - 20082001
Alignment:
| Q |
150 |
aaattagaaaatggattgtgacttataaatgaaaacaagtgtaaaa |
195 |
Q |
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| T |
20081956 |
aaattagaaaattgattgtgacttataaataaaaaaacgtgtaaaa |
20082001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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