View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_low_21 (Length: 369)

Name: NF18766_low_21
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_low_21
NF18766_low_21
[»] chr7 (11 HSPs)
chr7 (114-369)||(1971096-1971359)
chr7 (160-369)||(37362426-37362622)
chr7 (180-268)||(7841360-7841448)
chr7 (72-109)||(39262777-39262814)
chr7 (14-96)||(39739021-39739103)
chr7 (72-110)||(48844138-48844176)
chr7 (110-182)||(24759474-24759546)
chr7 (76-107)||(2440075-2440106)
chr7 (314-369)||(7841458-7841512)
chr7 (12-54)||(15515332-15515374)
chr7 (12-54)||(15840380-15840422)
[»] chr4 (27 HSPs)
chr4 (110-290)||(14210313-14210491)
chr4 (110-290)||(14211282-14211460)
chr4 (110-290)||(14212233-14212411)
chr4 (110-290)||(14214170-14214348)
chr4 (110-290)||(14215139-14215317)
chr4 (110-290)||(14218010-14218188)
chr4 (110-290)||(14219949-14220127)
chr4 (110-290)||(14220900-14221078)
chr4 (110-290)||(14209362-14209540)
chr4 (110-267)||(14213223-14213380)
chr4 (110-290)||(14216108-14216286)
chr4 (110-290)||(14217059-14217237)
chr4 (110-267)||(14219001-14219158)
chr4 (110-290)||(14221869-14222047)
chr4 (110-290)||(14222838-14223016)
chr4 (179-369)||(41810243-41810425)
chr4 (110-182)||(30176040-30176112)
chr4 (164-245)||(1068910-1068991)
chr4 (114-182)||(11214843-11214910)
chr4 (114-182)||(11225354-11225421)
chr4 (72-111)||(16030585-16030624)
chr4 (166-236)||(8540950-8541019)
chr4 (12-46)||(27070755-27070789)
chr4 (12-46)||(27150841-27150875)
chr4 (72-108)||(2304305-2304341)
chr4 (14-57)||(6895525-6895568)
chr4 (20-54)||(23009137-23009171)
[»] chr1 (13 HSPs)
chr1 (110-290)||(40981488-40981666)
chr1 (88-290)||(50290411-50290611)
chr1 (110-214)||(29836239-29836343)
chr1 (110-259)||(27843642-27843791)
chr1 (109-268)||(6919549-6919708)
chr1 (292-369)||(7607902-7607978)
chr1 (169-262)||(14184747-14184840)
chr1 (8-57)||(26452074-26452123)
chr1 (293-369)||(31770890-31770965)
chr1 (110-203)||(38240176-38240269)
chr1 (72-107)||(51382509-51382544)
chr1 (74-108)||(38509035-38509069)
chr1 (74-107)||(39183239-39183272)
[»] chr3 (18 HSPs)
chr3 (115-369)||(53689246-53689487)
chr3 (144-267)||(12812821-12812944)
chr3 (160-369)||(52311478-52311676)
chr3 (109-268)||(45458409-45458567)
chr3 (194-290)||(14459162-14459256)
chr3 (169-262)||(52130851-52130943)
chr3 (110-214)||(29129130-29129234)
chr3 (108-182)||(43399448-43399522)
chr3 (192-287)||(25489560-25489653)
chr3 (304-369)||(52130959-52131023)
chr3 (115-268)||(53556759-53556912)
chr3 (110-182)||(52126885-52126957)
chr3 (76-108)||(50719204-50719236)
chr3 (76-108)||(50793612-50793644)
chr3 (16-51)||(9195980-9196015)
chr3 (74-107)||(29157525-29157558)
chr3 (164-236)||(18996233-18996304)
chr3 (164-236)||(18998772-18998843)
[»] chr2 (13 HSPs)
chr2 (110-290)||(31409598-31409776)
chr2 (108-182)||(22145644-22145718)
chr2 (17-97)||(28928826-28928906)
chr2 (109-201)||(26449092-26449184)
chr2 (13-64)||(9535291-9535342)
chr2 (109-182)||(38403354-38403427)
chr2 (72-107)||(6673922-6673957)
chr2 (74-107)||(16970265-16970298)
chr2 (74-107)||(28003478-28003511)
chr2 (72-109)||(32286934-32286971)
chr2 (74-111)||(38943997-38944034)
chr2 (74-107)||(38993391-38993424)
chr2 (76-104)||(27534974-27535002)
[»] chr8 (14 HSPs)
chr8 (110-263)||(29729269-29729421)
chr8 (108-182)||(8022722-8022796)
chr8 (181-252)||(19962134-19962204)
chr8 (164-214)||(16395613-16395663)
chr8 (107-259)||(765505-765657)
chr8 (72-109)||(45239359-45239396)
chr8 (76-108)||(9885367-9885399)
chr8 (72-108)||(32721323-32721359)
chr8 (164-236)||(40173252-40173323)
chr8 (76-107)||(4970052-4970083)
chr8 (72-107)||(38684865-38684900)
chr8 (76-109)||(23830912-23830945)
chr8 (109-182)||(38681136-38681209)
chr8 (75-108)||(43418199-43418232)
[»] chr6 (10 HSPs)
chr6 (110-182)||(18645950-18646022)
chr6 (72-132)||(20910732-20910788)
chr6 (72-132)||(20925180-20925236)
chr6 (113-182)||(8840653-8840722)
chr6 (110-150)||(34008621-34008661)
chr6 (17-54)||(22817844-22817881)
chr6 (72-108)||(7018679-7018715)
chr6 (71-107)||(15298439-15298475)
chr6 (12-64)||(22790851-22790903)
chr6 (76-108)||(26846230-26846262)
[»] chr5 (7 HSPs)
chr5 (14-64)||(15814480-15814530)
chr5 (71-109)||(37340380-37340418)
chr5 (15-64)||(15730727-15730776)
chr5 (109-182)||(4077837-4077910)
chr5 (72-105)||(6702116-6702149)
chr5 (74-107)||(26113650-26113683)
chr5 (110-182)||(40946710-40946782)
[»] scaffold0192 (1 HSPs)
scaffold0192 (72-109)||(19119-19156)
[»] scaffold0188 (1 HSPs)
scaffold0188 (74-107)||(28312-28345)
[»] scaffold0096 (1 HSPs)
scaffold0096 (164-268)||(32812-32916)
[»] scaffold0790 (1 HSPs)
scaffold0790 (72-108)||(3966-4002)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 114 - 369
Target Start/End: Original strand, 1971096 - 1971359
Alignment:
Q  114 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaattag 213  Q
    |||||||||||||||||||   |||||||||||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaatctatccagaccgttagatcattataattag 1971195  T
Q  214 gggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaacaac---tgttactatctcacctct 310  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||| ||||  || ||||||| |||||   ||||||||||||||||||    
T  1971196 gggaggttagcacatcagccgttgatcaaa--tcactctttgaaaattgatacacgcgcatacagagaaacaacacaactgatgttactatctcacctct 1971293  T
Q  311 tcattat-------tcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
     ||||||       | |||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  1971294 ccattatttatttattgttcaataccaatgcaaactctacagagccccatgcttccctcttcttct 1971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 160 - 369
Target Start/End: Complemental strand, 37362622 - 37362426
Alignment:
Q  160 taaacctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaa 259  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||    
T  37362622 taaacctacttttttggctccaatctatccagatcgttagatcattgtaattaggagcggttagcacatcagccgttgatcaaatctcactccttgaaaa 37362523  T
Q  260 ttgatacacgtgcatctagggaaacaaaacaactgttactatctcacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttcc 359  Q
    |||| ||||| |||  ||||||||||||||  || ||         | ||| ||||||| ||||||||| |||||||||| || ||||||||||||||||    
T  37362522 ttgacacacgcgca--tagggaaacaaaac--ctctt---------cttctccattatttgttcaatactgatgcaaactctacagagccccatgcttcc 37362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 7841360 - 7841448
Alignment:
Q  180 caatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacac 268  Q
    ||||| |||||||||||||||||||||||| |||| |  |||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  7841360 caatcaatccagaccgttagatcattgtaagtaggagctgttagcgcatcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 39262814 - 39262777
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39262814 ataagacccgtgcggcgcacgggtcggcgttctagttt 39262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 39739103 - 39739021
Alignment:
Q  14 gacttatttaacatcaatgaaaatatataatataacttattggtctttattttgatgaataagacccgtgcggcgcacgggtc 96  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||| | ||||  | |  ||| |||||||||| ||||||||||    
T  39739103 gacttatttaacaacaacgaaaatatataacataacttattggtgtctattgcgctcgataggacccgtgcgacgcacgggtc 39739021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 48844176 - 48844138
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagttta 110  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48844176 ataagacccgtgcgacgcacgggtcggcgttctagttta 48844138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 24759474 - 24759546
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    |||||||||||||||||||||||   ||| ||||||||||||| ||||  ||| ||||  |||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 24759546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 2440075 - 2440106
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||||||||||||    
T  2440075 gacccgtgcggcgcacgggtcggcgttctagt 2440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 7841458 - 7841512
Alignment:
Q  314 ttattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    ||||| |||||||||| ||||||||| || ||| ||||||||||||||||||||||    
T  7841458 ttatttgttcaatacc-atgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 15515374 - 15515332
Alignment:
Q  12 atgacttatttaacatcaatgaaaatatataatataacttatt 54  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  15515374 atgacttatttaacatcaataaaaatatataaaataacatatt 15515332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15840380 - 15840422
Alignment:
Q  12 atgacttatttaacatcaatgaaaatatataatataacttatt 54  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  15840380 atgacttatttaacatcaataaaaatatataaaataacatatt 15840422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14210491 - 14210313
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14210392  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14210391 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14210313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14211460 - 14211282
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14211361  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14211360 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14211282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14212411 - 14212233
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14212312  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14212311 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14212233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14214348 - 14214170
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14214249  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14214248 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14214170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14215317 - 14215139
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14215218  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14215217 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14215139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14218188 - 14218010
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14218089  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14218088 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14218010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14220127 - 14219949
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14220028  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14220027 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14219949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14221078 - 14220900
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14220979  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14220978 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14209540 - 14209362
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    ||||||||||||||||| |||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14209441  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14209440 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14209362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 14213380 - 14213223
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14213281  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgataca 267  Q
    ||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  14213280 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgataca 14213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14216286 - 14216108
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    ||||||||||| |||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14216187  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14216186 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14216108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14217237 - 14217059
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    ||||||||||||||||| |||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14217138  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14217137 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14217059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 14219158 - 14219001
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14219059  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgataca 267  Q
    ||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  14219058 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgataca 14219001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14222047 - 14221869
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattttaa 14221948  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14221947 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14221869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 14223016 - 14222838
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccattagatcattgtaa 14222917  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  14222916 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 179 - 369
Target Start/End: Original strand, 41810243 - 41810425
Alignment:
Q  179 ccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctag 278  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||  ||||| || ||  |    
T  41810243 ccaatcaatccagaccgttagatcattgtaagtaggggcggttagcatatcaaccattgatcaaatctcactccttgaaaattgtaacacgcgcgtc--g 41810340  T
Q  279 ggaaacaaaacaactgttactatctcacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    |     |||||   ||||| |||| ||||||| ||||||| |||||||||| ||||||||| || || |||||||||||||||||||||||    
T  41810341 g-----aaaactgatgttattatcacacctctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct 41810425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 30176040 - 30176112
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||  ||| ||||  |||||||||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaa 30176112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 1068991 - 1068910
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgtt-gatcaaatc 245  Q
    |||||||||||||||||| | ||||| ||| |||||||||||||||||| || || ||||||||||| ||||| |||||||||    
T  1068991 cctacttttttggctccattttatcctgactgttagatcattgtaatta-ggaagattagcacatcagccgttagatcaaatc 1068910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 11214843 - 11214910
Alignment:
Q  114 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  11214843 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatccta-atttttggctccaa 11214910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 11225354 - 11225421
Alignment:
Q  114 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  11225354 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatccta-atttttggctccaa 11225421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 16030624 - 16030585
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtttat 111  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  16030624 ataagacccgtgcggcgcacgggtcggtgttctagtttat 16030585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 8540950 - 8541019
Alignment:
Q  166 tacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgtt 236  Q
    |||||||||||||||| | ||||| | |||||||||||||||||||| || |  |||||||||||||||||    
T  8540950 tacttttttggctccattttatcctggccgttagatcattgtaatta-ggaaaattagcacatcaaccgtt 8541019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 27070755 - 27070789
Alignment:
Q  12 atgacttatttaacatcaatgaaaatatataatat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  27070755 atgacttatttaacatcaatgaaaatatataatat 27070789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 27150841 - 27150875
Alignment:
Q  12 atgacttatttaacatcaatgaaaatatataatat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  27150841 atgacttatttaacatcaatgaaaatatataatat 27150875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 2304305 - 2304341
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2304305 ataagacccatgcggcgcacgggtcggcgttctagtt 2304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 6895568 - 6895525
Alignment:
Q  14 gacttatttaacatcaatgaaaatatataatataacttattggt 57  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||    
T  6895568 gacttatttaacaacaatgaaaatatataacataatttattggt 6895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 23009171 - 23009137
Alignment:
Q  20 tttaacatcaatgaaaatatataatataacttatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  23009171 tttaacaccaatgaaaatatataatataacttatt 23009137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 40981666 - 40981488
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 40981567  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    |||| |||||||||||| ||| |||||||||||| ||||||| || |||||||||||||| |||  ||||||||| |||||    
T  40981566 ttagaggaggttagcacttcagccgttgatcaaaactcactctttaaaaattgatacacgcgca--tagggaaaccaaaca 40981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 290
Target Start/End: Original strand, 50290411 - 50290611
Alignment:
Q  88 gcacgggtcggcgttctagtttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctat 187  Q
    ||||||||||  | |||||| ||||||||||||||||||||| ||   ||||||| ||||| |||| |||  |||||||| ||||||||||||||| |||    
T  50290411 gcacgggtcgatggtctagtatatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaatttat 50290510  T
Q  188 ccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaa 287  Q
    |||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||| |||  ||  ||||||||||||    
T  50290511 ccagaccgttagatcattataattagaggaggttagcacatcagtcgttgataaaatctcactccttgaaaattgatagacgctca--tagggaaacaaa 50290608  T
Q  288 aca 290  Q
    |||    
T  50290609 aca 50290611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 29836239 - 29836343
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  |||||||||||||||||||||||||||||| ||||||||||||| | |||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaa 29836338  T
Q  210 ttagg 214  Q
    |||||    
T  29836339 ttagg 29836343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 27843791 - 27843642
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||| || ||  ||||||||| || | |   || |||||||||||||||||| | ||||| |||||||||||||||||||    
T  27843791 atcctttatatctaatcctagcagcaacgcaaaccctaattgccaacctccaaccctacttttttggctccattttatcctgaccgttagatcattgtaa 27843692  T
Q  210 ttaggggaggttagcacatcaaccgtt-gatcaaatctcactccttgaaaa 259  Q
    |||  | || ||||||||||| ||||| ||||||||| |||||||||||||    
T  27843691 tta-agaagattagcacatcagccgttagatcaaatcacactccttgaaaa 27843642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 6919549 - 6919708
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgta 208  Q
    ||||||||||||||||||||||||| |||||  || |||||| || | |  ||| |||||||||||||||||| | ||| | ||||||||||||||||||    
T  6919549 tatcctttatatctaatcctagcagcaatgcaaactctaattgccaacctctaaccctacttttttggctccattttattctgaccgttagatcattgta 6919648  T
Q  209 attaggggaggttagcacatcaaccgtt-gatcaaatctcactccttgaaaattgatacac 268  Q
    |||| |  |  ||||||||||| ||||| ||||||||| ||||| ||||||| ||| ||||    
T  6919649 atta-gaaaaattagcacatcagccgttagatcaaatcacactctttgaaaaatgaaacac 6919708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 7607978 - 7607902
Alignment:
Q  292 ctgttactatctcacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    |||||| |||| ||||||| ||||||| |||||||||| ||||||||| || || |||||||||||||||||||||||    
T  7607978 ctgttattatcacacctctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct 7607902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 14184747 - 14184840
Alignment:
Q  169 ttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattg 262  Q
    ||||| ||| |||||| ||||| || ||||||||||| ||| |||||| |||||||||||||  | |||||||||| ||||||||| |||||||    
T  14184747 tttttaggcgccaatcaatccaaactgttagatcattataagtaggggcggttagcacatcagtcattgatcaaatgtcactccttaaaaattg 14184840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 26452123 - 26452074
Alignment:
Q  8 aacaatgacttatttaacatcaatgaaaatatataatataacttattggt 57  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26452123 aacaatgacttattcaatatcaatgaaaatatataatataacttattggt 26452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 31770965 - 31770890
Alignment:
Q  293 tgttactatctcacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    ||||| |||| ||||||| ||||||| |||||||||| ||||||||| || || |||||||||||||||||||||||    
T  31770965 tgttattatcacacctctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct 31770890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 38240269 - 38240176
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatca 203  Q
    |||||||||||||||||||||||| |||||  |||||||||  | | |  ||| |||||||||||||||||| | |||||  ||||||||||||    
T  38240269 atcctttatatctaatcctagcagcaatgcaaaccctaattgtcaacctctaaccctacttttttggctccattttatcctaaccgttagatca 38240176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 51382544 - 51382509
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||| ||||||||||||||||    
T  51382544 ataagacccgtgcggcgcatgggtcggcgttctagt 51382509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 38509035 - 38509069
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    |||||||||||||||||||||| ||||||||||||    
T  38509035 aagacccgtgcggcgcacgggttggcgttctagtt 38509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 39183239 - 39183272
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    |||||||||||||||||||| |||||||||||||    
T  39183239 aagacccgtgcggcgcacggatcggcgttctagt 39183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 115 - 369
Target Start/End: Original strand, 53689246 - 53689487
Alignment:
Q  115 ttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaattagg 214  Q
    |||||| |||||||||||   ||||||||||||||| || |||  |||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcattgtaattaag 53689345  T
Q  215 ggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaacaactgttactatctcacctcttcat 314  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| | ||||| |||  ||||||||||||||  ||       |||    |||  ||    
T  53689346 ggaggttagcacatcagccattgatcaaatctcactccttgaaaattaacacacgcgca--tagggaaacaaaacccct-------tct----tctctat 53689432  T
Q  315 tattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  53689433 tatttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttct 53689487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 12812944 - 12812821
Alignment:
Q  144 cctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaa 243  Q
    |||||||||| |||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12812944 cctaatttccaaaccccaaacctacttttttcgctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcagccgttgatcaaa 12812845  T
Q  244 tctcactccttgaaaattgataca 267  Q
    |||||||| |||||||||||||||    
T  12812844 tctcactcattgaaaattgataca 12812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 369
Target Start/End: Complemental strand, 52311676 - 52311478
Alignment:
Q  160 taaacctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaa 259  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52311676 taaacctacttttttgcctccaatctatcctgaccgttagatgattgtaattaggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaa 52311577  T
Q  260 ttgatacacgtgcatctagggaaacaaaacaactgttactatctcacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttcc 359  Q
    |||| ||| | |||| | ||||||||||||  || ||         | ||| ||||||| |||||||||||||||||||| || ||||||||||| | ||    
T  52311576 ttgacacatgcgcatatggggaaacaaaac--ctctt---------cttctccattatttgttcaataccgatgcaaactctacagagccccatgttgcc 52311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 109 - 268
Target Start/End: Complemental strand, 45458567 - 45458409
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgta 208  Q
    |||||||||||||| ||||||| |   |||||||||||||||||| ||| ||||| ||||||||||| |||||||| ||||| | |||||||||||||||    
T  45458567 tatcctttatatctgatcctagtaaacatgcttaccctaatttcc-aaccttaaatctacttttttgactccaatccatccaaatcgttagatcattgta 45458469  T
Q  209 attaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacac 268  Q
    |||| ||  ||||| ||||| | || ||||||||||||||||||||||||||||| ||||    
T  45458468 attaaggatggttaacacatgagcccttgatcaaatctcactccttgaaaattgaaacac 45458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 290
Target Start/End: Complemental strand, 14459256 - 14459162
Alignment:
Q  194 cgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    |||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  14459256 cgttagatcattataactaggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaattgatacacgagca--tagggaaacaaaaca 14459162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 52130851 - 52130943
Alignment:
Q  169 ttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattg 262  Q
    ||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  52130851 tttttaggcgccaatcaatccagaccgttagatcattgtaagtaggggaggttagcacatcaaccattgatcaaatctcact-cttgaaaattg 52130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 29129130 - 29129234
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  |||||||||||||||||||||||||||||| ||||||||||||| | |||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaa 29129229  T
Q  210 ttagg 214  Q
    |||||    
T  29129230 ttagg 29129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 43399448 - 43399522
Alignment:
Q  108 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||    
T  43399448 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaa 43399522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 25489560 - 25489653
Alignment:
Q  192 accgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaa 287  Q
    ||||||||||||||||||||||| | |||||| |||||| ||||| ||||||||||||| ||| |||||||| |||||||||  ||||||||||||    
T  25489560 accgttagatcattgtaattaggagcggttagtacatcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgca--tagggaaacaaa 25489653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 52130959 - 52131023
Alignment:
Q  304 cacctcttcattattcgttcaataccgatgcaaactgtagagagccccatgcttccctcttcttct 369  Q
    ||||||| ||||||| |||||||||||||||||||| || || |||||||||||||||||||||||    
T  52130959 cacctctccattatt-gttcaataccgatgcaaactctacagtgccccatgcttccctcttcttct 52131023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 268
Target Start/End: Complemental strand, 53556912 - 53556759
Alignment:
Q  115 ttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaattagg 214  Q
    ||||||||||||||||||| ||| |  ||||||||| || | |  ||| ||||||||||| |||||| | ||||  ||| |||||||| |||||||||      
T  53556912 ttatatctaatcctagcagaaatacaaaccctaattgccaacctctaaccctacttttttagctccattttatcgtgactgttagatcgttgtaatta-a 53556814  T
Q  215 ggaggttagcacatcaaccgtt-gatcaaatctcactccttgaaaattgatacac 268  Q
    | || ||||||| ||| ||||| ||||||||| ||||||||||||| ||| ||||    
T  53556813 gaagattagcacttcagccgttagatcaaatcacactccttgaaaaatgaaacac 53556759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 52126885 - 52126957
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaa 52126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 50719204 - 50719236
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    |||||||||||||||||||||||||||||||||    
T  50719204 gacccgtgcggcgcacgggtcggcgttctagtt 50719236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 50793644 - 50793612
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    |||||||||||||||||||||||||||||||||    
T  50793644 gacccgtgcggcgcacgggtcggcgttctagtt 50793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 9195980 - 9196015
Alignment:
Q  16 cttatttaacatcaatgaaaatatataatataactt 51  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9195980 cttatttaacatcgatgaaaatatataatataactt 9196015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 29157525 - 29157558
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    |||||||||||| |||||||||||||||||||||    
T  29157525 aagacccgtgcgccgcacgggtcggcgttctagt 29157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 18996304 - 18996233
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgtt 236  Q
    |||||||||||||||||| | ||||  ||||||||||||||| || ||| || || ||||||||||| |||||    
T  18996304 cctacttttttggctccattttatcgtgaccgttagatcattttagtta-ggaagattagcacatcagccgtt 18996233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 18998843 - 18998772
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgtt 236  Q
    |||||||||||||||||| | ||||  ||||||||||||||| || ||| || || ||||||||||| |||||    
T  18998843 cctacttttttggctccattttatcgtgaccgttagatcattttagtta-ggaagattagcacatcagccgtt 18998772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 31409776 - 31409598
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    ||||||||||| |||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 31409677  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattgatacacgtgcatctagggaaacaaaaca 290  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||  |||| ||||||||||    
T  31409676 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 31409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 22145718 - 22145644
Alignment:
Q  108 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaa 22145644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 28928826 - 28928906
Alignment:
Q  17 ttatttaacatcaatgaaaatatataatataacttattggtctttattttgatgaataagacccgtgcggcgcacgggtcg 97  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||||   |  ||||||||||||||| ||||||||||    
T  28928826 ttatttaacatcaatagaaatatataatataacttattgatctttatttaagtcgataagacccgtgcggagcacgggtcg 28928906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 26449092 - 26449184
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagat 201  Q
    ||||||||||||||||||||||||   ||||||||||||||| || |||  |||  ||| ||||||||||||||  ||| | |||||||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaaattattctgaccgttagat 26449184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9535342 - 9535291
Alignment:
Q  13 tgacttatttaacatcaatgaaaatatataatataacttattggtctttatt 64  Q
    ||||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  9535342 tgacttatttaacatcaacataaatatataatataatttattggtctttatt 9535291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 38403354 - 38403427
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||| |||||  |||||| || || |||  ||| |||| ||||||||||||||    
T  38403354 tatcctttatatctaatcctagcagcaatgcaaaccctatttgccaaaccctaatcctaattttttggctccaa 38403427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 6673922 - 6673957
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    |||||||||||||||||||||||||||| |||||||    
T  6673922 ataagacccgtgcggcgcacgggtcggccttctagt 6673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 16970265 - 16970298
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    |||||||||||| |||||||||||||||||||||    
T  16970265 aagacccgtgcgacgcacgggtcggcgttctagt 16970298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 28003478 - 28003511
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||| ||||||||||||||||    
T  28003478 aagacccgtgcggcgcaagggtcggcgttctagt 28003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 32286934 - 32286971
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32286934 ataagacccgtgcggcgcacgggtcggctatctagttt 32286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 38944034 - 38943997
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagtttat 111  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  38944034 aagacctgtgcggcgcacgggtcggcgatctagtttat 38943997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 38993424 - 38993391
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  38993424 aagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 27534974 - 27535002
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttct 104  Q
    |||||||||||||||||||||||||||||    
T  27534974 gacccgtgcggcgcacgggtcggcgttct 27535002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 29729421 - 29729269
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 209  Q
    ||||||||||| |||||| |||| || |||||||||||||| || ||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  29729421 atcctttatatttaatccaagcaata-tgcttaccctaattgccaaaccttaaacctaattttttggctccaatcaatccagaccattagatcattgtaa 29729323  T
Q  210 ttaggggaggttagcacatcaaccgttgatcaaatctcactccttgaaaattga 263  Q
    ||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  29729322 ttaggagcggttaacacatcaaccgttgatcaaatctcactccatgaaaattga 29729269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 8022722 - 8022796
Alignment:
Q  108 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||  |||||||||||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaa 8022796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 19962134 - 19962204
Alignment:
Q  181 aatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgttgatcaaatctcactcc 252  Q
    |||| |||||||||||||||||||||||||||||| |  |||| | |||| |||||||||||||||||||||    
T  19962134 aatcaatccagaccgttagatcattgtaattagggta-attagtatatcagccgttgatcaaatctcactcc 19962204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 16395613 - 16395663
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattagg 214  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  16395613 cctacttttttggctccattttatcctgaccgttagatcattgtaattagg 16395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 259
Target Start/End: Original strand, 765505 - 765657
Alignment:
Q  107 tttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccagaccgttagatcattg 206  Q
    |||||||||||||| ||||| |||||   ||||  ||||| ||| || | |  ||| |||||||||||||||||| | ||||| || ||||||||| |||    
T  765505 tttatcctttatatttaatcgtagcaaacatgcaaaccctgattgccaacctctaaccctacttttttggctccattttatcctgatcgttagatccttg 765604  T
Q  207 taattaggggaggttagcacatcaaccgtt-gatcaaatctcactccttgaaaa 259  Q
    |||||| || || ||||||||||| ||||| || |||||| ||||| |||||||    
T  765605 taatta-ggaagattagcacatcagccgttagaccaaatcacactctttgaaaa 765657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 45239396 - 45239359
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45239396 ataagacccgtgcggcgcacgggtcggcgttctagttt 45239359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 9885399 - 9885367
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    |||||||||||||||||||||||||||||||||    
T  9885399 gacccgtgcggcgcacgggtcggcgttctagtt 9885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32721323 - 32721359
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32721323 ataagacctgtgcggcgcacgggtcggcgttctagtt 32721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 40173323 - 40173252
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgtt 236  Q
    |||| ||||||||||||| | ||||| | |||||||||||||||||||| || |  |||||||||||||||||    
T  40173323 cctatttttttggctccattttatcctggccgttagatcattgtaatta-ggaaaattagcacatcaaccgtt 40173252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 4970052 - 4970083
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||||||||||||    
T  4970052 gacccgtgcggcgcacgggtcggcgttctagt 4970083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 38684865 - 38684900
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||||||||| ||||||    
T  38684865 ataagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 23830912 - 23830945
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    |||||||||| |||||||||||||||||||||||    
T  23830912 gacccgtgcgacgcacgggtcggcgttctagttt 23830945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 38681136 - 38681209
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||   |||||||||||| || |  |||  ||| |||| ||||||||||||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaa 38681209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 43418232 - 43418199
Alignment:
Q  75 agacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    ||||| ||||||||||||||||||||||||||||    
T  43418232 agacctgtgcggcgcacgggtcggcgttctagtt 43418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 18645950 - 18646022
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||  ||| ||||  |||||||||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 18646022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 20910788 - 20910732
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtttatcctttatatctaatcctagca 132  Q
    |||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  20910788 ataagacccgtgcggcgcacgggtcggcgttctag----tcttttatatctaatcctagca 20910732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 20925236 - 20925180
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtttatcctttatatctaatcctagca 132  Q
    |||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  20925236 ataagacccgtgcggcgcacgggtcggcgttctag----tcttttatatctaatcctagca 20925180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 8840653 - 8840722
Alignment:
Q  113 ctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||   ||||||||||||||| || ||| ||||||||| ||||| ||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaa 8840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 34008621 - 34008661
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatt 150  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  34008621 atcctttatatttaatcctagcagtaatgcttaccctaatt 34008661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 22817881 - 22817844
Alignment:
Q  17 ttatttaacatcaatgaaaatatataatataacttatt 54  Q
    |||||||||||||||||||| |||||||||||||||||    
T  22817881 ttatttaacatcaatgaaaacatataatataacttatt 22817844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 7018679 - 7018715
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  7018679 ataagacccatgcggcgcacgggtcgacgttctagtt 7018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 15298439 - 15298475
Alignment:
Q  71 aataagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  15298439 aataagacctgtgcggcgcacggatcggcgttctagt 15298475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 22790903 - 22790851
Alignment:
Q  12 atgacttatttaacatcaatgaaaatatataatataacttattggtctttatt 64  Q
    |||| |||||||||||||||   |||||||||||||| |||||| ||||||||    
T  22790903 atgagttatttaacatcaatagtaatatataatataatttattgatctttatt 22790851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 26846230 - 26846262
Alignment:
Q  76 gacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    ||||||||||| |||||||||||||||||||||    
T  26846230 gacccgtgcggtgcacgggtcggcgttctagtt 26846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 15814530 - 15814480
Alignment:
Q  14 gacttatttaacatcaatgaaaatatataatataacttattggtctttatt 64  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  15814530 gacttatttaacatcaataaaaatagataatctaacttattggtctttatt 15814480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 37340380 - 37340418
Alignment:
Q  71 aataagacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  37340380 aataagacccgtgcggggcacgggtcggcgttctagttt 37340418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 15730776 - 15730727
Alignment:
Q  15 acttatttaacatcaatgaaaatatataatataacttattggtctttatt 64  Q
    ||||||||| |||||||||||||| ||||||||| |||||| ||||||||    
T  15730776 acttatttatcatcaatgaaaatagataatataatttattgatctttatt 15730727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 4077837 - 4077910
Alignment:
Q  109 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    ||||||||||||||||||||||||   ||||||| ||||||| || |||  ||| |||  ||||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaa 4077910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 6702116 - 6702149
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttcta 105  Q
    ||||||||||||||| ||||||||||||||||||    
T  6702116 ataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 26113650 - 26113683
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  26113650 aagacccgtgcggcgcacgggtcagcgttctagt 26113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 40946710 - 40946782
Alignment:
Q  110 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 182  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  ||| | || ||||||||||||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaa 40946782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 19156 - 19119
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagttt 109  Q
    |||||||||||||||||||||| |||||||||||||||    
T  19156 ataagacccgtgcggcgcacggatcggcgttctagttt 19119  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 28345 - 28312
Alignment:
Q  74 aagacccgtgcggcgcacgggtcggcgttctagt 107  Q
    ||||||||||||||||||||||||||||||||||    
T  28345 aagacccgtgcggcgcacgggtcggcgttctagt 28312  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 32916 - 32812
Alignment:
Q  164 cctacttttttggctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcaaccgt-tgatcaaatctcactccttgaaaattg 262  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| |||  | || ||||||||||| ||||  ||||||||| ||||| || |||| ||    
T  32916 cctacttttttggctccattttatcctgaccgttagatcattgtattta-agaagattagcacatcagccgtcagatcaaatcacactctttaaaaaatg 32818  T
Q  263 atacac 268  Q
    | ||||    
T  32817 aaacac 32812  T

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Target: scaffold0790 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 3966 - 4002
Alignment:
Q  72 ataagacccgtgcggcgcacgggtcggcgttctagtt 108  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3966 ataagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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