View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18766_low_22 (Length: 359)
Name: NF18766_low_22
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 45512488 - 45512406
Alignment:
| Q |
236 |
acaaccaatgctttcccattggcaacagtgagtgcctttccatgtagaaagcttgtttggtgaatcatgtgtaatggatgctt |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45512488 |
acaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgtttggtgaatcatgtgcaatggatgctt |
45512406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 45512816 - 45512679
Alignment:
| Q |
18 |
gtagattcttgagatttccaagattgttgggaatcctcccgctaaaagccgcattagagagagatagatactcaagacgtcccatggaaccgatgaacat |
117 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||||||||| | |||| ||| ||||| ||||||||||| |||||||||||||| | |||||| |
|
|
| T |
45512816 |
gtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacat |
45512717 |
T |
|
| Q |
118 |
aggaattggactcaaactgaaataatttccagtcaagt |
155 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
45512716 |
aggaattggactcccactgaaattatttccagacaagt |
45512679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 45512671 - 45512627
Alignment:
| Q |
148 |
agtcaagtattccaagtgcaacaaagatgagctcagatttggagc |
192 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
45512671 |
agtcaagtgttccaattgcaacaaagatgagctcacatttggagc |
45512627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 22848798 - 22848880
Alignment:
| Q |
73 |
agagagagatagatactcaagacgtcccatggaaccgatgaacataggaattggactcaaactgaaataatttccagtcaagt |
155 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
22848798 |
agagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagt |
22848880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 22848706 - 22848770
Alignment:
| Q |
17 |
tgtagattcttgagatttccaagattgttgggaatcctcccgctaaaagccgcattagagagaga |
81 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
22848706 |
tgtaaattcttgagatttccaagattgttgggaatcctccctttgaaagccgcattagagagaga |
22848770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 22848888 - 22848928
Alignment:
| Q |
148 |
agtcaagtattccaagtgcaacaaagatgagctcagatttg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22848888 |
agtcaagtattccaagtgcaacaaagatgagctcagatttg |
22848928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University