View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_24 (Length: 353)
Name: NF18766_low_24
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 40069518 - 40069200
Alignment:
| Q |
13 |
catcaataagttcctctgaaagactatccacattgcttaattgctctctcaaatcatcattctccaatctctgaaacattattcataattatcatatcat |
112 |
Q |
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| T |
40069518 |
catcaataagttcctctgaaagactatccacattgcttaattgctctctcaaatcatcattgtccaatctctgaaacattattcataattatcatatcat |
40069419 |
T |
|
| Q |
113 |
taaaaatgtttaaatttaatcatagttaattctaaagttgcacttgcacatatgattggttatgatacgctaatggtataaaactttttagattgaccat |
212 |
Q |
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| T |
40069418 |
taaaaatgtttaaatttaatcatagttaattctaaagttgcatttgcacatatgattggttatgatac------ggtataaaactttttaaattgaccat |
40069325 |
T |
|
| Q |
213 |
atgacatgattaaactcgtgaatatagtacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcgga |
312 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
40069324 |
gtgacatgattaaactggtgtatatagtacttacatttcgttttccatttagtcgacctagacgcgtgcttacatttacaatacgaccaccagccgcgga |
40069225 |
T |
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| Q |
313 |
cgccttcattaatggaatcatagct |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
40069224 |
cgccttcattaatggaatcatagct |
40069200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 10898922 - 10898859
Alignment:
| Q |
240 |
tacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacc |
303 |
Q |
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| T |
10898922 |
tacttacatttcgtcttccatttaatcgacctagacgcgagcttacgtttacaattcgagcacc |
10898859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 31179441 - 31179481
Alignment:
| Q |
111 |
attaaaaatgtttaaatttaatcatagttaattctaaagtt |
151 |
Q |
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||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
31179441 |
attaaaaatgtttaactttaattatagttatttctaaagtt |
31179481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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