View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_26 (Length: 325)
Name: NF18766_low_26
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 15676357 - 15676040
Alignment:
| Q |
1 |
gatcaactatctcttacttttcctcccaaattaatttttgttt--ggtcaaggggctactttgtttcgatcgatccttttccaa-ttcgttttgggttca |
97 |
Q |
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|||||||||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
15676357 |
gatcaactatcttttacttttcctcccaaataattttttttttctggtcaaggggctacttttttaggatcgatccttttccaaattcgttttgggttca |
15676258 |
T |
|
| Q |
98 |
tctctctatgacaaaaggagctataa-------gtgtatgtctagtgcccaattgaaaggcacatatccttaccttatatatggagtgcctctgacattt |
190 |
Q |
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||||| |||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15676257 |
tctctttatgacaaaaggtggtataacttataagtgtatgtctagtgcccaattaaaaggcacatatccttaccttatacatggagtgcctctgacattt |
15676158 |
T |
|
| Q |
191 |
gataaataaaaagggaagcacaaatatcagccttccttcatctttttagctgagtggagattttgtccgtttggcactttgattcttttgttgctaaggt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
15676157 |
gataaataaaaagggaagcacaaatatcagccttccttcatatttttagctgagtggagattttgtccgtttggcattttgattcttttggtgctaatgt |
15676058 |
T |
|
| Q |
291 |
aatgcagtggttttgatg |
308 |
Q |
| |
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|||||||||||||||||| |
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| T |
15676057 |
aatgcagtggttttgatg |
15676040 |
T |
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