View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_3 (Length: 808)
Name: NF18766_low_3
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 7488900 - 7489365
Alignment:
| Q |
1 |
cgaagataaattaatcaatttgatataatgagtcgagaattgatctttcgtatcgtaaacaaatttgtccacaatataaagatatcatagactaatttta |
100 |
Q |
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| T |
7488900 |
cgaagacaaattaatcaatttgatataatgagtcgaaaattgatctttcgtatgataaacaaatttgtccacaatataaaaatatca--gactaatttta |
7488997 |
T |
|
| Q |
101 |
gtacattgnnnnnnnnnnnnnnngggtcatattcctttcttattgtaatgattcaaaggattattgtaaaacaaaaagtcataagagattaaaattcaag |
200 |
Q |
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| T |
7488998 |
gtacaat----ttttttttttttgggtcatattcctttcttattgtaatgattcaaaggattattgtaaaacaaaaagtcataagagattaaaattcaag |
7489093 |
T |
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| Q |
201 |
taaaagtttcgaatttcacataaaaataaattgagtttaatattannnnnnncaagaaattaaagtggatattaaatannnnnnnnnnaaaa-tttctgc |
299 |
Q |
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| T |
7489094 |
taaaagtt-cgaatttcacataaaaataaattgagtttaatattatttttttcaagaaattaaagtggatattaaatatttttttaaaaaaaatttctgc |
7489192 |
T |
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| Q |
300 |
aaaacgaggccgttttgttacaattagattcacctccatcacaattcataaaccctaaatcaaatcctcttctctcgctcctcaaccctaaa-ccccaaa |
398 |
Q |
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| T |
7489193 |
aaaacgaagccgttttgttacaattagattcacctccatcacaattcataaaccctaaatcaaatcctcttctctcactcctcaaccctaaacccccaaa |
7489292 |
T |
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| Q |
399 |
cgccggcaacaccaccaccgcacaattccaccgtcgccacctcatccaccgccgcattctccttttcaaccat |
471 |
Q |
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| T |
7489293 |
caccggcaacaccaccaccgcacaattccaccgtcgccacctcatccaccgccgcattctccttttcaaccat |
7489365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 631 - 793
Target Start/End: Original strand, 7489531 - 7489693
Alignment:
| Q |
631 |
aagatgaataagaagctaaaaatggaagcgaagaaagctaatatgcgcggtgtttgttatttgagtcgaattcctcctcatatggatcatgttaagcttc |
730 |
Q |
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| T |
7489531 |
aagatgaagaagaagctgaaaatggaagcgaagaaagctaatatgcgcggtgtttgttatttgagtcgaattcctcctcatatggatcatgttaagcttc |
7489630 |
T |
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| Q |
731 |
gtcaacttctttcgcaattcggtgatattcaaagaatttatcttgctcctcaaggtcattcat |
793 |
Q |
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| T |
7489631 |
gtcaacttctttcgcaattcggtgatattcaaagaatttatcttgctcctcaaggtcattcat |
7489693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 566
Target Start/End: Original strand, 7489426 - 7489460
Alignment:
| Q |
532 |
gagattaacgctacaacaatagcatcaaatgatga |
566 |
Q |
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| T |
7489426 |
gagattaacgctacaacaatagcatcaaatgatga |
7489460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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