View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_low_30 (Length: 302)

Name: NF18766_low_30
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_low_30
NF18766_low_30
[»] chr5 (1 HSPs)
chr5 (9-95)||(28151225-28151310)
[»] chr4 (3 HSPs)
chr4 (9-73)||(17538707-17538771)
chr4 (9-73)||(17539756-17539820)
chr4 (7-95)||(11913853-11913939)
[»] chr8 (3 HSPs)
chr8 (9-73)||(29275989-29276053)
chr8 (10-95)||(13274288-13274372)
chr8 (10-73)||(29261181-29261250)
[»] chr1 (1 HSPs)
chr1 (32-79)||(147013-147060)
[»] chr7 (1 HSPs)
chr7 (23-73)||(43697539-43697589)
[»] chr6 (2 HSPs)
chr6 (13-95)||(15953120-15953201)
chr6 (32-79)||(12877159-12877206)
[»] chr3 (1 HSPs)
chr3 (11-76)||(6239960-6240025)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 28151310 - 28151225
Alignment:
Q  9 gattattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataatattatgtcctatttttacaaca 95  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||    
T  28151310 gattattctcattaacataaattgattcttatatttatatgttgattattatttgtagggatattcttatg-cctaattttacaaca 28151225  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 17538707 - 17538771
Alignment:
Q  9 gattattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataat 73  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  17538707 gattattctcattaacataaattgattcttatatttatatattgattattatttgtagagataat 17538771  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 17539756 - 17539820
Alignment:
Q  9 gattattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataat 73  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  17539756 gattattatcattaacataaattgattcttatatttatatattgattattatttgtagagataat 17539820  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 11913939 - 11913853
Alignment:
Q  7 tagattattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataatattatgtcctatttttacaaca 95  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||| ||| |||||| |||||| ||| ||||||||||    
T  11913939 tagattattctcattaacataaactgattcttatattcatatgttaattattatttatagagataat-ttatgt-ctaattttacaaca 11913853  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 29275989 - 29276053
Alignment:
Q  9 gattattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataat 73  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  29275989 gattattcccattaacataaattgattcttatatttatattttgattattatttgtagagataat 29276053  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 13274372 - 13274288
Alignment:
Q  10 attattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataatattatgtcctatttttacaaca 95  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||||||||||||||  ||| | ||||| |||| ||||||||||    
T  13274372 attattctcattagtataaattgattcttatatttatatgttaattattatttgtagaaatattcttatg-cctaattttacaaca 13274288  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 29261181 - 29261250
Alignment:
Q  10 attattctcattaacataaatcgattcttat------atttatatgttgattattatttgtagggataat 73  Q
    ||||||| ||||||||||||| |||||||||      |||||||| ||||||||||||||||| ||||||    
T  29261181 attattcccattaacataaattgattcttatatttatatttatattttgattattatttgtagagataat 29261250  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 147060 - 147013
Alignment:
Q  32 gattcttatatttatatgttgattattatttgtagggataatattatg 79  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  147060 gattcttatatttatatgttgattattatttatagagataatcttatg 147013  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 43697539 - 43697589
Alignment:
Q  23 acataaatcgattcttatatttatatgttgattattatttgtagggataat 73  Q
    |||||||| |||||||||||||||  |||||||||||||||||| ||||||    
T  43697539 acataaattgattcttatatttattcgttgattattatttgtagagataat 43697589  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 15953120 - 15953201
Alignment:
Q  13 attctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataatattatgtcctatttttacaaca 95  Q
    |||||||||||  |||||  ||||||||||| |||||||||||||||||| | | |||||| |||||| ||| ||||||||||    
T  15953120 attctcattaatttaaattcattcttatattaatatgttgattattatttattgagataatcttatgt-ctaattttacaaca 15953201  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 12877206 - 12877159
Alignment:
Q  32 gattcttatatttatatgttgattattatttgtagggataatattatg 79  Q
    ||||||||||||||||| ||||||||||||| ||| |||||| |||||    
T  12877206 gattcttatatttatatattgattattatttatagagataatcttatg 12877159  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 6240025 - 6239960
Alignment:
Q  11 ttattctcattaacataaatcgattcttatatttatatgttgattattatttgtagggataatatt 76  Q
    |||||||||| || ||||||  ||| |||||||||||| ||| ||||||||| ||| |||||||||    
T  6240025 ttattctcatcaatataaattaattattatatttatatattgtttattatttatagagataatatt 6239960  T

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