View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_35 (Length: 284)
Name: NF18766_low_35
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 37615707 - 37615973
Alignment:
| Q |
16 |
attaatatatagttactcaatgtactgaattgttctgacgtaatgcgattaattgacgtatgatcgtcttacataggttnnnnnnnttcgaagatatgag |
115 |
Q |
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| T |
37615707 |
attaatatatagttactcaatatactgaattgttctgacgtaatgcgattaattgacgtacgatcgtcttacataggttaaaaaaattcgaagatatgag |
37615806 |
T |
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| Q |
116 |
agacatacatagcc--------------tatgttactccaccctgaatttaaatatatcaattcaaagcaaattgactaacatagttggtttcttataag |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37615807 |
agacatacatagccataattgttcggcctatgttactccaccctgaatttaaatatatcaattcaaagcaaattgactaacatagttggtttctaataag |
37615906 |
T |
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| Q |
202 |
tgtatctattgcaaaatatgtaaccatcagcaccaattcacctgaaaacgttaaataacatataagt |
268 |
Q |
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| T |
37615907 |
tgtatctattgcaaaatatgtaaccatcagcaccaattcacctgaaaacattaaataacatataagt |
37615973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 22083728 - 22083488
Alignment:
| Q |
16 |
attaatatatagttactcaatgtactgaattgttctgacgtaatgcgattaattgacgtatgatcgtcttacataggttnnnnnnnttcgaagatatgag |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
22083728 |
attaagatatagttactcaatgtactgaattgttctgacgtaatgcgattaattcacgtatgatcgtcttacataggt----------cgaagatatgag |
22083639 |
T |
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| Q |
116 |
agacatacatagcc--------------tatgttactccaccctgaatttaaatatatcaattcaaagcaaattgactaacatagttggtttcttataag |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22083638 |
agacatacatagccataactgttcggcctatgttactccaccctgaatttaaatatatcaattcaaagt----------------ttggtttcttataag |
22083555 |
T |
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| Q |
202 |
tgtatctattgcaaaatatgtaaccatcagcaccaattcacctgaaaacgttaaataacatataagt |
268 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22083554 |
tgtatctattgcaaaatatgtaaccatcagctccaattcacctgaaaacgttaaataacatataagt |
22083488 |
T |
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