View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_36 (Length: 281)
Name: NF18766_low_36
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 38293075 - 38292824
Alignment:
| Q |
19 |
aggaattcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattcaa |
118 |
Q |
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| T |
38293075 |
aggaattcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggattggtaaagtgaatttaggaagagcatatggcccttattcaa |
38292976 |
T |
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| Q |
119 |
gagttatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttggaaatatgctgaccatgagtaagttttaatgattaaata |
218 |
Q |
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| T |
38292975 |
gagttatattttgggaaacatacctttcttcagtggtactttcaggaggatgggatccttggaaatatggaggccatgagtaagttttaatgattaaata |
38292876 |
T |
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| Q |
219 |
cnnnnnnnnnnatgcataagaatgaccatttttgggtgcttatattcttgga |
270 |
Q |
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| T |
38292875 |
cttttttttttatgcataagaatgaccatttttgggtgcatatattattgga |
38292824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 38300656 - 38300405
Alignment:
| Q |
19 |
aggaattcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38300656 |
aggaattcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggattggtaaagtgaatttaggaagagcatatggcccttattcaa |
38300557 |
T |
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| Q |
119 |
gagttatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttggaaatatgctgaccatgagtaagttttaatgattaaata |
218 |
Q |
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| T |
38300556 |
gagttatattttgggaaacatacctttcttcagtggtactttcaggaggatgggatccttggaaatatggaggccatgagtaagttttaatgattaaata |
38300457 |
T |
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| Q |
219 |
cnnnnnnnnnnatgcataagaatgaccatttttgggtgcttatattcttgga |
270 |
Q |
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| T |
38300456 |
cttttttttttatgcataagaatgaccatttttgggtgcatatattattgga |
38300405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 38305566 - 38305405
Alignment:
| Q |
19 |
aggaattcatcaaccgaaccatctggttttgtttttagaggagga-gaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattca |
117 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||| | | | || || || || ||||||||| ||||||| |||| |||||||||||| |
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| T |
38305566 |
aggaattcatcaaatgaaccaagtggttttgtttttagaggaggacgcattgac-ggaattgggaaagtgaatctaggaagggcatggggcccttattca |
38305468 |
T |
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| Q |
118 |
agagttatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttgg |
180 |
Q |
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||||||||||||||| | ||| | |||||||| || ||||||||| ||||||||||||||||| |
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| T |
38305467 |
agagttatattttgggaaacatacctttcttcggttgtacttcctcaaggatgggatgcttgg |
38305405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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