View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_37 (Length: 263)
Name: NF18766_low_37
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 25352211 - 25352104
Alignment:
| Q |
134 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
233 |
Q |
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| T |
25352211 |
ttggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaacctgcccaattg |
25352112 |
T |
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| Q |
234 |
tgattaac |
241 |
Q |
| |
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|||||||| |
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| T |
25352111 |
tgattaac |
25352104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25352348 - 25352245
Alignment:
| Q |
1 |
cgcctgtaccatcttatgtgagtcgtcatatcttcattttatttcaattcttagttactta----ataatgtactttctgtaacacatctcttggatatt |
96 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25352348 |
cgcctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaatatataatgtactttctgtaacacatctcttggatatt |
25352249 |
T |
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| Q |
97 |
gtag |
100 |
Q |
| |
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|||| |
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| T |
25352248 |
gtag |
25352245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 25357010 - 25356914
Alignment:
| Q |
7 |
taccatcttatgtgagtcgtcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||||| |
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| T |
25357010 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 25349805 - 25349711
Alignment:
| Q |
7 |
taccatcttatgtgagtcgtcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgt |
98 |
Q |
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| T |
25349805 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 25349672 - 25349566
Alignment:
| Q |
134 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
233 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
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| T |
25349672 |
ttggatttaaagatggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggt-ctgggagagatgcaactagtccaattg |
25349574 |
T |
|
| Q |
234 |
tgattaac |
241 |
Q |
| |
|
|||||||| |
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|
| T |
25349573 |
tgattaac |
25349566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 25356880 - 25356773
Alignment:
| Q |
134 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
233 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||| || | |||||| |
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| T |
25356880 |
ttggatttaaaggtggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgcagccagtccaattt |
25356781 |
T |
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| Q |
234 |
tgattaac |
241 |
Q |
| |
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|||||||| |
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|
| T |
25356780 |
tgattaac |
25356773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 25361649 - 25361580
Alignment:
| Q |
31 |
tcttcattttatttcaattcttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
100 |
Q |
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|||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||| ||||||||||||| |
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| T |
25361649 |
tcttcattttatttcaattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
25361580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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