View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_39 (Length: 252)
Name: NF18766_low_39
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 24154280 - 24154053
Alignment:
| Q |
13 |
gaagaatatctatggaataaagcttgcaaagaaatgctaatcaagccaaggaactcaatggaagcttattgtcaacaactcaaactgaacatcgacgaaa |
112 |
Q |
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| T |
24154280 |
gaagaatatctatggaataaagcttgcaaagaaatgctaatcaagccagggaactcaatggaagcttattgtcatcaactcaaactgaacatcgacgaaa |
24154181 |
T |
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| Q |
113 |
cagaacccttgcagaacttatgcaagcgttacctttgtcctctaccagggaacattgtgagcattttttgcaatcagaaatgcaaatgtggaatgcttta |
212 |
Q |
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| T |
24154180 |
cagaacccttgcagtacttatgcgagtatcctttttgtcgtttagttaggaacagttggagcattttttacaaacagaaatgcaaatgtggaatgctttt |
24154081 |
T |
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| Q |
213 |
taactcaggtcctgtcgttattgatgat |
240 |
Q |
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| T |
24154080 |
taactcaggtcctgtcgttatcgatgat |
24154053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 21199708 - 21199792
Alignment:
| Q |
35 |
cttgcaaagaaatgctaatcaagccaaggaactcaatggaagcttattgtcaacaactcaaactgaacatcgacgaaacagaacc |
119 |
Q |
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| T |
21199708 |
cttgcaaggaaatgctactcgagccaaggaattccatggaagcttattgtcagaagatgaaactgaatatcgacgacacagaacc |
21199792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 24122012 - 24121948
Alignment:
| Q |
37 |
tgcaaagaaatgctaatcaagccaaggaactcaatggaagcttattgtcaacaactcaaactgaa |
101 |
Q |
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| T |
24122012 |
tgcaaagaaatgctactcaaccctagaaactcaatggaggcgtattgtcaacagctcaaactgaa |
24121948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 24238277 - 24238322
Alignment:
| Q |
37 |
tgcaaagaaatgctaatcaagccaaggaactcaatggaagcttatt |
82 |
Q |
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| T |
24238277 |
tgcaaggaaatgctactcaagccaaggaactccatggaagtttatt |
24238322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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