View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_4 (Length: 735)
Name: NF18766_low_4
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 244 - 719
Target Start/End: Complemental strand, 33042717 - 33042242
Alignment:
| Q |
244 |
atcaagaaagagcttcatgatcgttttcaccagaaaatggtactcgtgcttttcaattgaagaaaaatatcctgacttttcttacgggacactatgagtc |
343 |
Q |
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| T |
33042717 |
atcaagaaagagcttcatgatcgttttcaacagaaaatggtactcgtgcttttcaattgaagaaaaatatcctgacttttcttacgggacactatgagtc |
33042618 |
T |
|
| Q |
344 |
tcttaatcaggtctatggctaaaaccctctaatggatccattaccatccatcaatgatgttctatcaagggtttcttaagacgaaaagcaacaagaggtc |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33042617 |
tcttaatcaggtctatggctaaaaccctctaatggatccattaccatccatcaatgatgttctatcaagggtttcttaagacgaaaagcaacaagaggtc |
33042518 |
T |
|
| Q |
444 |
ttggtcgcctcaacttctgctgaatctcggttagcttttgcagttcaaaacattgtaaaaatcaccaagaaagattagcatatg-gctcacattgtgttc |
542 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33042517 |
ttggtcgcctcaacttctgctgaatctcggttagc-tttgcagttcaaaacattgtaaaaatcaccaagaaagattagcatatgtgctcacattgtgttc |
33042419 |
T |
|
| Q |
543 |
ttattggactaaagaaaaagatttcaaaattcacatgtatcccccaactcaagaaaggtcagagttcaaaacctacttcttaagcaaatcaagtcttaga |
642 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33042418 |
ttattggactaaagaaaaagatttcaaaattcacatgtatcccccaactcaagaaaggtcagagttcaaaacctacttcttaagcaaatcaagtctcaga |
33042319 |
T |
|
| Q |
643 |
cggtgttcttgatgctcaacattgttagcaactgattcaattcttgaaaacttaattgaccaaagcaaccatatcaa |
719 |
Q |
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| T |
33042318 |
cggtgttcttgatgctcaacattgttagcaactgattcaattcttgcaaacttaattgaccaaagcaaccatatcaa |
33042242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33042935 - 33042715
Alignment:
| Q |
1 |
tcatgatggttcatactttttgcattcattcaatcatcccaaaataattcgcaactcctcatcggtgacaatttcaagtcttggcgtcgagcaatgttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33042935 |
tcatgatggttcatactttttgcattcattcaatcatcccaaaataattcgcaactcctcatcggtgacaatttcaagtcttggcatcgagcaatgttga |
33042836 |
T |
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| Q |
101 |
tggttctctcccaaaatacactgaaaacaattctcaatttcattcttggatgcgaaacaacatcaccgtgtcatcttggttgttaaatttatatctccaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33042835 |
tggttctctcccaaattacactgaaaacaattctcaatttcattcttggatgcgaaacaacatcaccgtgtcatcttggttgttaaa-ttatatctccaa |
33042737 |
T |
|
| Q |
201 |
agaaatttcggtgagggtgatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33042736 |
agaaatttcggtgagggtgatc |
33042715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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