View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_41 (Length: 236)
Name: NF18766_low_41
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42262221 - 42262444
Alignment:
| Q |
1 |
ttgtcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgc |
100 |
Q |
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| T |
42262221 |
ttgtcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgc |
42262320 |
T |
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| Q |
101 |
tgttaaatggcaccattactttgatatcaagttatcgaggggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaa |
200 |
Q |
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| T |
42262321 |
tgttaaatggcaccattactttgatatcaagttatcgagaggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaa |
42262420 |
T |
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| Q |
201 |
tctctttattgtggggccatttca |
224 |
Q |
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| T |
42262421 |
tctctttattgtggggccatttca |
42262444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 42783254 - 42783323
Alignment:
| Q |
158 |
tatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggccatttcattg |
227 |
Q |
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| T |
42783254 |
tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggccgttgcattg |
42783323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 42449809 - 42449874
Alignment:
| Q |
147 |
tacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgt |
212 |
Q |
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| T |
42449809 |
tacttttcgcatatcaattttgggtaaacttggtgcgagagaatcttggatcaatctctttattgt |
42449874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 42449663 - 42449723
Alignment:
| Q |
4 |
tcatttgactttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggta |
64 |
Q |
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||||||||||||||||| |||| |||| ||| ||| |||| ||||||||||||||||||| |
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| T |
42449663 |
tcatttgactttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggta |
42449723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 7488823 - 7488773
Alignment:
| Q |
146 |
ctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatgga |
196 |
Q |
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| T |
7488823 |
ctacttttcacatatcaattttgggtgaaattggtgtgaaagaatcatgga |
7488773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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