View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_47 (Length: 214)
Name: NF18766_low_47
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3974252 - 3974457
Alignment:
| Q |
1 |
gctttaatccggaattagtggaaaaaaggagcatgatgtggtgttcggtcgggacggattcgcgagacattttctcgtgatatttaacattattcaattt |
100 |
Q |
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| T |
3974252 |
gctttaatccggaattagtggaaaaaaggagcatgatgtggtgttcggtcgggatggattcgcgagacattttctcgtgatatttaacattattcaattt |
3974351 |
T |
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| Q |
101 |
ggatactttatttcttctcattctc---------nnnnnnnnnnnnncattcattaagttgtgtataaaatatagagatagatgtccccatgagcttaac |
191 |
Q |
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| T |
3974352 |
ggatactctatttcttctcattctctctctctcttttttttttttttcattcattaagttgtgtataaaatatagagatagatgtccccatgagcttaac |
3974451 |
T |
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| Q |
192 |
tcattt |
197 |
Q |
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|||||| |
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| T |
3974452 |
tcattt |
3974457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 37905563 - 37905481
Alignment:
| Q |
2 |
ctttaatccggaattagtggaaaaaaggagcatgatgtggtgttcggtcgggacggattcgcgagacattttctcgtgatatt |
84 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
37905563 |
ctttaatccggaattagtggaaaaaatgagcatgatgtggtgttcagtcgggaaggattcgcgagacatgttctcgtgatatt |
37905481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 47373132 - 47373191
Alignment:
| Q |
38 |
gtggtgttcggtcgggacggattcgcgagacattttctcgtgata--tttaacattattc |
95 |
Q |
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| T |
47373132 |
gtggtgttcagtcgtgaagaatttgcgagacattttctcgtgatatttttaacattattc |
47373191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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