View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18766_low_5 (Length: 701)

Name: NF18766_low_5
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18766_low_5
NF18766_low_5
[»] chr4 (1 HSPs)
chr4 (21-684)||(55941081-55941743)


Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 21 - 684
Target Start/End: Original strand, 55941081 - 55941743
Alignment:
Q  21 ctgatatgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55941081 ctgatatgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaag 55941180  T
Q  121 cagaggttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55941181 cagaggttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgct 55941280  T
Q  221 tgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagcnnnn 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  55941281 tgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagcaaaa 55941380  T
Q  321 nnnnnnnnnnnnnn-taataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaaccttctcaatgtaaaaggatagaaccacggg 419  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55941381 acaaacaaaaaataataataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaaccttctcaatgtaaaaggatagaaccacggg 55941480  T
Q  420 attcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagtttctctctcaatctcactcaattcggatatgat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55941481 attcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagtttctctctcaatctcactcaattcggatatgat 55941580  T
Q  520 ataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctagaacctctcac--tataactcttggataagatg 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  55941581 ataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctagaacctctcgctatataactcttggataagatg 55941680  T
Q  618 acaaaactccgtgcaaattctcctatatatttataggagaagaacatgacttcctatatgaatgaag 684  Q
    |||||||||||||||||||||||    |||||||||||||||||| |||||||||| ||||||||||    
T  55941681 acaaaactccgtgcaaattctcc----tatttataggagaagaacgtgacttcctacatgaatgaag 55941743  T

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