View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_6 (Length: 695)
Name: NF18766_low_6
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 471 - 680
Target Start/End: Complemental strand, 2568067 - 2567858
Alignment:
| Q |
471 |
gtctgatttaaccgacttatataaagacgatgtatttcaaaatatttctaatggcttttgttggaaaatccttacccacaaagttgaacatggacaacaa |
570 |
Q |
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| T |
2568067 |
gtctgatttaaccgacttatataaagacgatgtatttcaaaatatttctaatggcttttgttggaaaatccttacccacaaaattgaacatggacaacaa |
2567968 |
T |
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| Q |
571 |
ggtggcatggggtccaagtccaagaaccctggcctctatttctttcttttctggtcctatgaatatgatagctccacacaagataattacaatataaata |
670 |
Q |
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| T |
2567967 |
ggtggcatggggtccaagtccaagaaccctggcctctatttctttcttttctggtcctatgaatatgatagctccacacaagataattacaatataaata |
2567868 |
T |
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| Q |
671 |
aatgcaatat |
680 |
Q |
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|||||||||| |
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| T |
2567867 |
aatgcaatat |
2567858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 255 - 394
Target Start/End: Complemental strand, 2568225 - 2568086
Alignment:
| Q |
255 |
gattttcatacccttacaaacaagtttacaagttttgcaagaatacattacaacaatataaaaattagataatattattgtgaatatgatcggatattta |
354 |
Q |
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| T |
2568225 |
gattttcatacccttacaaacaagtttacaagttttgcaagaatacattacaacaatataaaaattagataatattattgtgaatatgatcggatattta |
2568126 |
T |
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| Q |
355 |
taattgttgcatcaaaataatgtttaagcgtgtcaatagg |
394 |
Q |
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| T |
2568125 |
taattgttgcatcaaaataatgtttaagcgtgtcaatagg |
2568086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 2568447 - 2568295
Alignment:
| Q |
42 |
tgaaaaacggtgtcacattatcttgttattaaatctataactaaaatgacataacatttgtgtttggcgctaat-------caatatctttgcacaaatc |
134 |
Q |
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| T |
2568447 |
tgaaaaacagtgtcacattatcttgttattaaatctataactaaaatgacataacatttatatttggcgctgatttacactcaatatctttgcacaaatc |
2568348 |
T |
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| Q |
135 |
gttagattctacattacatcatccttgacaattggatgagctgcagtgcattg |
187 |
Q |
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| T |
2568347 |
gttagattctacattacatcatccttgacaattggatgagctgcagtgcattg |
2568295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2568519 - 2568478
Alignment:
| Q |
1 |
tgattaccacttagtgattgttgtcccttggatcctcatatt |
42 |
Q |
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| T |
2568519 |
tgattaccacttagtgatcgttgtcccttggatcctcatatt |
2568478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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