View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18766_low_8 (Length: 598)
Name: NF18766_low_8
Description: NF18766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18766_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 598
Target Start/End: Complemental strand, 31591523 - 31590944
Alignment:
| Q |
19 |
tgatcagcagctgcagtttcagtcatgtgagaatgttggacctgtatattgacagataccatatgaatgaacaataaatgttgcttacaaagtacttgct |
118 |
Q |
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| T |
31591523 |
tgatcagcagccgcagtttcagtcatgtgagaatgttggacctgtatattgacagataccatatgaatgaacaataaatgttgcttacaaagtacatgct |
31591424 |
T |
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| Q |
119 |
cgtattcaaaccaagcagaagaaaaatatccaattgtttttaataataagtagccaataaaatttagcaacaactggaaccttaacagcaactttttggc |
218 |
Q |
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| T |
31591423 |
cgtattcaaaccaagcagaagaaaaatatccaattgtttttattaataagtagccaataaaatttagcaacaactggaaccttaacagcaactttttggc |
31591324 |
T |
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| Q |
219 |
catcatgtgtgtgagctacatgaacttgtgcaagggaagcacttgctattggaactggatcaaactcggcaaatacctacatattagaagcaaaaattca |
318 |
Q |
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| T |
31591323 |
catcatgtgtgtgagctacatgaacttgtgcaagggaagcacttgctattggaactggatcaaactcggcaaatacctacatattagaagcaaaaattca |
31591224 |
T |
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| Q |
319 |
cccaccacgacaataaaatttttcaagaaaaaccgcaatcatgaataacaaaactaattaggcgaagatgagacattattaagaggaatgagacagatag |
418 |
Q |
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| T |
31591223 |
cccaccacgacaataacatttttcaagaaaaaccgcaatcatgaataacaaaactaattaggcgaagatgagacattattaagaggaatgaaacagatag |
31591124 |
T |
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| Q |
419 |
taaatactttatctggtgttgctccaaactcttttttgaatacatcacatatttgttcatacgaagaaaccggacatctatttagcatggactccctcat |
518 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31591123 |
taaatactttatctggtgttgctccaaactctttcttgaatacatcacatatttgttcatacgaagaaaccggacatctatttagcatggactccctcat |
31591024 |
T |
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| Q |
519 |
ggtctgaacatactcttgaggaactaagtattcctgtcattgacaatgaacaatcaaacaactaagcattgcatatcgtg |
598 |
Q |
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| T |
31591023 |
ggtctgaacatactcttgaggaactaagtattcctgtcattgacaataaacaaacaaacaactaagcattgcctatcgtg |
31590944 |
T |
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