View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18767_low_1 (Length: 794)
Name: NF18767_low_1
Description: NF18767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18767_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 1739302 - 1739739
Alignment:
| Q |
1 |
aaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatannnnnnnactctttatggagttatttgtatttttcagaatatgtttagat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1739302 |
aaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatatttttttactctttatggagttatttgtattttttagaatatgtttagat |
1739401 |
T |
|
| Q |
101 |
atatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739402 |
atatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactat |
1739501 |
T |
|
| Q |
201 |
gctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatatacttgattagtagtcg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1739502 |
gctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatatacttgattagtagttg |
1739601 |
T |
|
| Q |
301 |
attcttgaatcagataccaagttttnnnnnnnnnnnntcacgtgttgtttaatggcaagagtttaaccttttataacttaaaagtatataatttaaatcc |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739602 |
attcttgaatcagataccaagttt--aaaaaaaaaaaacacgtgttgtttaatggcaagagtttaaccttttataacttaaaagtatataatttaaatcc |
1739699 |
T |
|
| Q |
401 |
gctcaatgactattgtagtaaaatgacgattaatgttact |
440 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1739700 |
gctcaatgactattgcagtaaaatgacgattaatgttact |
1739739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 525 - 776
Target Start/End: Original strand, 1739824 - 1740075
Alignment:
| Q |
525 |
gttgcactaaagggcacgttacatgttatgtgttacagtttaaaatttaaatacatctcaaagacttactatgcccatgtgaaagcattgtcaagtgcag |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1739824 |
gttgcactaaagggcacgttacatgttatgtgttacaatttaaaatttaaatacatctcaaagacttactatgcccatgtgaaagcattgtcaagtgctg |
1739923 |
T |
|
| Q |
625 |
ccaaagatcccccaacaaaaggcttaggtggatttggatcttgagctatccaccatccaacaggtattctcactgcatctaatccattttgtgacataaa |
724 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739924 |
ccaaagctcccccaacaaaaggcttaggtggatttggatcttgagctatccaccatccaacaggtattctcactgcatctaatccattttgtgacataaa |
1740023 |
T |
|
| Q |
725 |
tctgaaatcatcttcagttatgtatgaattccaatggtcctgaaaagcaaac |
776 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
1740024 |
tctgaaatcatcttcagttatgtataaattccaatgctcctgcaaagcaaac |
1740075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 553 - 776
Target Start/End: Original strand, 1718514 - 1718737
Alignment:
| Q |
553 |
tgtgttacagtttaaaatttaaatacatctcaaagacttactatgcccatgtgaaagcattgtcaagtgcagccaaagatcccccaacaaaaggcttagg |
652 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
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|
| T |
1718514 |
tgtgttacaatttaaaatttaaatacatctcaaagacttactatgcccatgtgaaagcattgtcaagtgctgccaaagctcccccaacgaaaggcttagg |
1718613 |
T |
|
| Q |
653 |
tggatttggatcttgagctatccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaa |
752 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1718614 |
tgggtttggatcttgggctatccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtacgaa |
1718713 |
T |
|
| Q |
753 |
ttccaatggtcctgaaaagcaaac |
776 |
Q |
| |
|
|||||||| ||||| ||||||||| |
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|
| T |
1718714 |
ttccaatgctcctgcaaagcaaac |
1718737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 585 - 776
Target Start/End: Original strand, 1750257 - 1750448
Alignment:
| Q |
585 |
aagacttactatgcccatgtgaaagcattgtcaagtgcagccaaagatcccccaacaaaaggcttaggtggatttggatcttgagctatccaccatccaa |
684 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
1750257 |
aagacttactgtgcccatgtaaaagcattgtcaagtgcagccaaggatcctccaacaaaaggcttaggtggatttggatcataggctatccaccatccaa |
1750356 |
T |
|
| Q |
685 |
caggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccaatggtcctgaaaagcaaac |
776 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
1750357 |
caggtattctgactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccaatgctcctgcaaagcaaac |
1750448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 580 - 776
Target Start/End: Original strand, 1755316 - 1755512
Alignment:
| Q |
580 |
tctcaaagacttactatgcccatgtgaaagcattgtcaagtgcagccaaagatcccccaacaaaaggcttaggtggatttggatcttgagctatccacca |
679 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1755316 |
tctcaaagacttactgtgcccatgtgaaagcattgtctaatgctgccaatgatcctccaacaaaaggcttaggtgggtttggatcttgagctatccacca |
1755415 |
T |
|
| Q |
680 |
tccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccaatggtcctgaaaagcaaac |
776 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
1755416 |
tccaacaggtattctcactgcatttaatccattttgtgacatgaatgtgaaatcatcttcagttatgtaagaattccaatggtcctgcaaagcaaac |
1755512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 1717925 - 1718106
Alignment:
| Q |
94 |
tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
1717925 |
tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc |
1718024 |
T |
|
| Q |
194 |
ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagtta |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1718025 |
ccactatgctcaaaaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagtta |
1718106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 1754878 - 1755050
Alignment:
| Q |
113 |
aacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactatgctcaaaaccat |
212 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| || |||||||| ||| |||||||| || ||||||||||||| ||||| || ||| ||||| |
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|
| T |
1754878 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattaccat |
1754977 |
T |
|
| Q |
213 |
tttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| || ||||||||||||| |
|
|
| T |
1754978 |
tttgagaaccttcaactgcatgcaagtccacaatcactttcatcccatggattctgtaaattacaaagatata |
1755050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 104 - 285
Target Start/End: Original strand, 1749254 - 1749435
Alignment:
| Q |
104 |
tagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactatgct |
203 |
Q |
| |
|
|||||||| ||||||| ||||||||| || || |||| |||||||| || ||||| |||||| ||||||||||||||||||||||||| |||||||| | |
|
|
| T |
1749254 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
1749353 |
T |
|
| Q |
204 |
caaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
285 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| || ||||||||||||||| |||| | |||||| ||| ||||||||| |
|
|
| T |
1749354 |
cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatctcatgatttctgcaatttagaaagatata |
1749435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 38733119 - 38733148
Alignment:
| Q |
295 |
tagtcgattcttgaatcagataccaagttt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38733119 |
tagtcgattcttgaatcagataccaagttt |
38733148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 745
Target Start/End: Original strand, 38088448 - 38088597
Alignment:
| Q |
596 |
tgcccatgtgaaagcattgtcaagtgcagccaaagatcccccaacaaaaggcttaggtggatttggatcttgagctatccaccatccaacaggtattctc |
695 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| |||||||| |||||||| || |||| || | |||||||||||| || || || ||||| |
|
|
| T |
38088448 |
tgcccatgtgaaggcattgtcaagtgttttcaaggatcctccaacaaatggcttagggggtgttgggtccttagctatccaccaccccacgggaattctg |
38088547 |
T |
|
| Q |
696 |
actgcatctaatccattttgtgacataaatctgaaatcatcttcagttat |
745 |
Q |
| |
|
||||||| ||| ||||||| |||||| ||||||||||| ||||| ||||| |
|
|
| T |
38088548 |
actgcatttaacccattttctgacatgaatctgaaatcttcttctgttat |
38088597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 325
Target Start/End: Complemental strand, 39145682 - 39145652
Alignment:
| Q |
295 |
tagtcgattcttgaatcagataccaagtttt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39145682 |
tagtcgattcttgaatcagataccaagtttt |
39145652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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